BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg899665
Length=2676
Score E
Sequences producing significant alignments: (Bits) Value
AT2G23460.1 | Symbols: XLG1, ATXLG1 | extra-large G-protein 1 |... 3829 0.0
> AT2G23460.1 | Symbols: XLG1, ATXLG1 | extra-large G-protein 1
| chr2:9995478-9999122 FORWARD LENGTH=3065
Length=3065
Score = 3829 bits (2073), Expect = 0.0
Identities = 2495/2693 (93%), Gaps = 51/2693 (2%)
Strand=Plus/Plus
Query 2 TGAAAGAAGATGATTGTTGTTTGTTCGCTGAAGAATACGATGGTCCACCATTATCATACA 61
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 229 TGAAAGAAGATGATTGTTGTTTATTCGCTGAAGAATACGATGGTCCACCATTATCATACA 288
Query 62 ATATCCCTTGTGCTCTTCCGATTAACGTTGAGAAAATCCCCGTCGCCGCCGTTGTGTCTC 121
|||||||||||||| |||| |||||||| ||||||||||| |||||||||||||| ||||
Sbjct 289 ATATCCCTTGTGCTGTTCCTATTAACGTCGAGAAAATCCCAGTCGCCGCCGTTGTTTCTC 348
Query 122 CGGTTTGTATTTCTGATAACATGTCCTTT-CCTGTGATTCAACCGATTTTAGCTGTGGAG 180
||||||||||||| |||||||||| |||| ||||||||||||||||||||| | || |||
Sbjct 349 CGGTTTGTATTTCCGATAACATGT-CTTTCCCTGTGATTCAACCGATTTTATCAGTAGAG 407
Query 181 AGTACTAAGAAGTTTCTGAGAGATTCGGTTTCTCCTACTTCTGTTATTGCTAATTGTGGA 240
|||| || |||||||||| ||||||||||||||||||||||||||| ||||||||||||
Sbjct 408 AGTA--AA-AAGTTTCTGATAGATTCGGTTTCTCCTACTTCTGTTATAGCTAATTGTGGA 464
Query 241 TCTAATGAGCTTGAATTGGTTTCTGATTCAATCACTGTTTCGCCTACTTCGGTTATTGAG 300
|||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 465 TCTAATCAGCTTGAATTGGTTTCTGATTCAATCACTGTTTCTCCTACTTCGGTTATTGAA 524
Query 301 CATACGGAGGAAGAAGAAGGTGGTGATGGTGAGGATTG-TGGAATAAGTAGCTCTGGTGA 359
||||| ||||||||||||| | || ||| || || ||| | || | | | ||||
Sbjct 525 CATACTGAGGAAGAAGAAGAAGAAGAAGGT--GG--TGATGG--TGAG--GAT-T-GTGA 574
Query 360 GTTATTGTTGAGGTCTTGTTCT-GTTAGTT-TTGATCAATCTAGGGTTAGTTGTTCAGTG 417
| |||| | | | ||| | |||| ||| | | | || | ||||||||||
Sbjct 575 ---A---TTGA-G--TAGCTCTGGAGAGTTATTG-T---T-GA-GG-T-CTTGTTCAGTG 617
Query 418 AAAGAGAGCTTAGATTTGAATGA---ATCATCGAACCCGTTAGTACCGGATTGGGAATCG 474
|||||||| ||||| |||||||| || ||||| ||||||||||||||||||||||||
Sbjct 618 AAAGAGAGTTTAGACTTGAATGAGTCGTCTTCGAATCCGTTAGTACCGGATTGGGAATCG 677
Query 475 AATGAGTCGGTTTTGAGTATGGATTATCCGTCTTCTCGGGTTACTGGAGATTGTGTTAGT 534
|||||||| ||||||||||||||||| ||||| ||||| |||||||||||||||||||||
Sbjct 678 AATGAGTCAGTTTTGAGTATGGATTACCCGTCGTCTCGTGTTACTGGAGATTGTGTTAGT 737
Query 535 GAAAGTAATGGAGATGGTAAGAAGCAACCAGTTGTTACTTTCTTAGGTATTGCTTCTGAT 594
|| | |||||| |||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 738 GAGACTAATGGTGATGGTAAGAAGCAACCAGTTGTTACTTTCTTGGGTATTGCTTCTGAT 797
Query 595 GATGGCTTTGAGGAAGAGGAGAG-T-T-GTAACCAGAAGCGGGTTCGGGTTATGCCGGTT 651
||||| ||||||||||||||||| | | |||||| || ||||||||||||| | ||||||
Sbjct 798 GATGGATTTGAGGAAGAGGAGAGTTGTAGTAACCTGAGGCGGGTTCGGGTTGTACCGGTT 857
Query 652 AAGAAACAGCCTCAGACGAAAGGTAAAAAGGGGTCTTGTTATCGGTGTTTTAAAGGGAGT 711
||||||||||| |||||||||||||| ||||| |||||||||||||||||||||||||||
Sbjct 858 AAGAAACAGCCGCAGACGAAAGGTAAGAAGGGTTCTTGTTATCGGTGTTTTAAAGGGAGT 917
Query 712 CGGTTTACGGAGAAGGAAGTGTGTCTT-GTTTGTGATGCTAAGTATTGTAGCAGCTGTGT 770
||||||||||||||||||||||| || |||||||||||||||||||||| ||||||||
Sbjct 918 AGGTTTACGGAGAAGGAAGTGTGT-TTAGTTTGTGATGCTAAGTATTGTAATAGCTGTGT 976
Query 771 GCTTCGAGCTATGGGTTCTATGCCTGAAGGAAGGAAATGTGTTACTTGTATTGGGTTTCC 830
|||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 977 GCTTAGAGCTATGGGTTCTATGCCTGAAGGAAGGAAATGTGTTACTTGTATTGGCTTTCC 1036
Query 831 GATTGATGAATCGAAGCGAGGGAATTTAGGGAAATGCTCTAGGATGCTTAAGAGGTTACT 890
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||
Sbjct 1037 TATTGATGAATCGAAGCGAGGGAGTTTAGGGAAATGCTCTAGGATGCTTAAGAGGTTGCT 1096
Query 891 TAATGATTTGGAGGTTAAACAGATTATGAAGACTGAGAGGTTTTGTGAAGCTAATCAATT 950
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1097 TAATGATTTGGAGGTTAAACAGATTATGAAGACTGAGAGGTTTTGTGAAGCTAATCAGTT 1156
Query 951 ACCGGCTGAGTATGTGTATGTTAATGGACAACCTCTCTACCCTGAAGAGCTGGTTACACT 1010
||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1157 ACCAGCTGAGTATGTGTATGTTAATGGACAACCTCTTTACCCTGAAGAGCTGGTTACACT 1216
Query 1011 TCAGACTTGCTCTAATCCTCCGAAGAAGCTGAAACCGGGGGACTATTGGTATGATAAAGT 1070
||||||||| ||||||||||| |||||||||||||| |||||||||||||||||||||||
Sbjct 1217 TCAGACTTGTTCTAATCCTCCTAAGAAGCTGAAACCAGGGGACTATTGGTATGATAAAGT 1276
Query 1071 GTCTGGACTTTGGGGAAAGGAAGGAGAGAAGCCTTATCAGATTATTAGTCCCCATCTGAA 1130
|||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||
Sbjct 1277 GTCTGGACTTTGGGGAAAGGAAGGAGAGAAGCCTTATCAGATAATTAGTCCTCATCTGAA 1336
Query 1131 TGTTGGAGGTCCTATTAGTCCAGAAGCTAGCAACGGAAACACTCAAGTTTTCATAAACGG 1190
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1337 TGTTGGAGGTCCTATTAGTCCGGAAGCTAGCAACGGAAACACTCAAGTTTTCATAAACGG 1396
Query 1191 ACGCGAGATTACAAAAGTGGAGCTACGAATGCTGCAGTTGGCAGGAGTTCAATGTGCGGG 1250
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1397 TCGGGAGATTACAAAAGTGGAGCTACGAATGCTGCAGTTGGCAGGAGTTCAATGTGCGGG 1456
Query 1251 TAACCCTCATTTTTGGGTTAACGAAGATGGATCGTATCAAGAAGAAGGACAGAAGAATAC 1310
|||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1457 TAACCCACATTTTTGGGTTAACGAGGATGGATCGTATCAAGAAGAAGGACAGAAGAATAC 1516
Query 1311 CAAGGGATACATATGGGGCAAGGCTGGGACTAAGTTACTATGTGCTGTATTGTCACTTCC 1370
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1517 CAAGGGATACATATGGGGCAAGGCTGGGACTAAGTTACTTTGTGCTGTATTGTCACTTCC 1576
Query 1371 TGTTCCATCTAAATCTACTGCGAATGCTTCTGGGGAACAACTGTATAGCGCAAATAGCAG 1430
||| || || |||||||| ||||||||||||||||||||||| |||||||||||||||||
Sbjct 1577 TGTACCGTCAAAATCTACCGCGAATGCTTCTGGGGAACAACTCTATAGCGCAAATAGCAG 1636
Query 1431 AAGCATTTTGGACCATCTTGAGCATAGGACTTTACAGAAAATT-TTGTTGGTTGGAAACA 1489
||||||| ||||||||||||||||||||||||| || |||||| || |||||||||||||
Sbjct 1637 AAGCATTCTGGACCATCTTGAGCATAGGACTTTGCAAAAAATTCTT-TTGGTTGGAAACA 1695
Query 1490 GAGGTTCTGGAACTAGTACCATATTCAAGCAGGCAAAGATCCTTTACAAGGACGTGCCAT 1549
| |||||||||||||| || |||||||||||||||||||||||||| |||||||| ||||
Sbjct 1696 GTGGTTCTGGAACTAGCACAATATTCAAGCAGGCAAAGATCCTTTATAAGGACGTACCAT 1755
Query 1550 TCTTGGAAGATGAGCGTGAAAATATAAAGGTGATTATCCAGACCAATGTGTATGGTTATC 1609
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1756 TCTTGGAAGATGAGCGTGAAAACATAAAGGTGATTATCCAGACCAATGTGTATGGTTATC 1815
Query 1610 TCGGTATGCTTCTTGAGGGCCGGGAGCGGTTTGAAGAAGAAGCTCTTGCTGTCAGGAACA 1669
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1816 TCGGTATGCTTCTTGAGGGCCGGGAGCGGTTTGAAGAAGAAGCTCTTGCTCTCAGGAACA 1875
Query 1670 CTAAGCAGTGTGTCATTGAAAATATTCCTGCAGATGAAGGAGATGCTAAAAGCAACTACA 1729
| |||||||||||| |||||||||| |||||||||||||||||||| ||||||||| |||
Sbjct 1876 CGAAGCAGTGTGTCCTTGAAAATATACCTGCAGATGAAGGAGATGCGAAAAGCAACGACA 1935
Query 1730 AAACC---A---TGTACTCCATTGGCCCAAGGCTTAAAGCATTTTCTGATTGGCTATTAA 1783
||||| | |||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1936 AAACCGTCACCATGTACTCCATTGGCCCGAGGCTTAAAGCATTTTCTGATTGGCTATTAA 1995
Query 1784 AGACTATGGCTGCTGGAAATCTCGGTGTCATTTTCCCTGCAGCTTCCCGTGAGTATGCGC 1843
|||||||||||||||||||||| || ||||||||||||||||| || |||||||||||||
Sbjct 1996 AGACTATGGCTGCTGGAAATCTTGGGGTCATTTTCCCTGCAGCCTCTCGTGAGTATGCGC 2055
Query 1844 CACTGGTTGAAGAGTTATGGAGGGATACAGCGATCCAAGCTACATACAAGCGAAGAAGCG 1903
|||| ||||| ||||||||||||||| |||| ||||||||||||||||| || ||||| |
Sbjct 2056 CACTAGTTGAGGAGTTATGGAGGGATGCAGCTATCCAAGCTACATACAAACGGAGAAGTG 2115
Query 1904 AGCTAGGACTCCTTCCGAGTGTTGCTAGTTACTTCTTGGAACGGGCTATTGACGTATTGA 1963
|||||||||||||||| ||||| ||||||||||||||||| |||||||||||||| ||||
Sbjct 2116 AGCTAGGACTCCTTCCCAGTGTCGCTAGTTACTTCTTGGAGCGGGCTATTGACGTGTTGA 2175
Query 1964 CACCAGACTATGAGCCATCGGATTTGGATATATTATACGCAGAAGGAGTCACTTCGTCCA 2023
||||||| || |||||||| ||||||||||||||||| ||||||||||||||||| ||||
Sbjct 2176 CACCAGATTACGAGCCATCAGATTTGGATATATTATATGCAGAAGGAGTCACTTCATCCA 2235
Query 2024 GTGGTCTAGCTTCTCTCGATTTCTCATTTCCACAGACTGCATCCGAAGAGAATCTTGATC 2083
|||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 2236 GTGGTCTAGCTTGTCTCGATTTCTCATTTCCACAGACTGCATCAGAAGAGAATCTTGATC 2295
Query 2084 CTTCTGATCACCATGATTCCTTGCTCAGGTACCAGTTAATAAGAGTACCCTCCAGAGGCC 2143
|||||||||||||||||||| ||||||||||||||||||| ||||||||||| |||||||
Sbjct 2296 CTTCTGATCACCATGATTCCCTGCTCAGGTACCAGTTAATTAGAGTACCCTCGAGAGGCC 2355
Query 2144 TCGGTGAAAACTGCAAATGGATAGATATGTTTGAAGACGTTGGGATGGTTGTTTTTGTTG 2203
|||| ||||||||||| ||||||||||||||||||||||| || |||||||| |||||||
Sbjct 2356 TCGGGGAAAACTGCAAGTGGATAGATATGTTTGAAGACGTCGGAATGGTTGTGTTTGTTG 2415
Query 2204 TTTCCATGAGTGACTACGACCAGGTTTCAGAAGATGGAACCAACAAGATGTTACTCACCA 2263
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
Sbjct 2416 TTTCCATGAGTGACTACGACCAGGTGTCAGAAGATGGAACCAACAAGATGTTACTCACAA 2475
Query 2264 AGAAACTCTTTGAAAGCATTATCACTCATCCCATCTTTGAGCACATGGACTTCCTCTTAA 2323
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
Sbjct 2476 AGAAACTCTTTGAAAGCATTATCACTCATCCCATCTTTGAGAACATGGACTTCCTCTTGA 2535
Query 2324 TACTCAACAAGTACGATCTCCTCGAAGAAAAAGTAGAACGCGTTCCTTTGTCACACTGCA 2383
| |||||||||||||||||| | ||||||||||||||||||||||||||| ||| ||||
Sbjct 2536 TTCTCAACAAGTACGATCTCTTGGAAGAAAAAGTAGAACGCGTTCCTTTGGCACGCTGCG 2595
Query 2384 AGTGGTTCCAAGACTTCAATCCTGTGGTCAGTCGTCACCGTGGTTCTAACAACGGTAACC 2443
|||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||
Sbjct 2596 AGTGGTTCCAAGACTTCAATCCCGTGGTCAGTCGTCACCGTGGTTCCAACAACGGTAACC 2655
Query 2444 CCACTTTGGGTCAGCTCGCTTTCCACTTCATGGCGGTTAAGTTCAAGCGGTTTTACTCTT 2503
|||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||
Sbjct 2656 CCACTTTGGGTCAGCTTGCCTTCCACTTCATGGCGGTTAAGTTCAAGCGGTTTTACTCTT 2715
Query 2504 CCTTGACCGGGAAAAAGCTGTTTGTTTCTTCAAGTAAGAGTTTGGACCCGAACAGTGTTG 2563
|||||||||||||||||||||||||||||||||| || ||||||||||| ||||||||||
Sbjct 2716 CCTTGACCGGGAAAAAGCTGTTTGTTTCTTCAAGCAAAAGTTTGGACCCAAACAGTGTTG 2775
Query 2564 ATTCATCGCTCAAGTTAGCTATGGAGGTTCTGAAATGGAGTGAGGAGAGAACAAACATCT 2623
|||| ||||| ||||||||||||||| | |||||||||||||||||||||||||||||||
Sbjct 2776 ATTCGTCGCTGAAGTTAGCTATGGAGATACTGAAATGGAGTGAGGAGAGAACAAACATCT 2835
Query 2624 GCTTGAGTGAATACTCAATGTACAGCACTGAGCCAAGTTCCTTCTCAAATTGA 2676
|| ||||||||||||| ||||| ||||||||||||||||||||||||||||||
Sbjct 2836 GCATGAGTGAATACTCTATGTATAGCACTGAGCCAAGTTCCTTCTCAAATTGA 2888
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 132892232007
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5