BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg899675

Length=540
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT2G23570.1 | Symbols: MES19, ATMES19 | methyl esterase 19 | ch...   754    0.0  


> AT2G23570.1 | Symbols: MES19, ATMES19 | methyl esterase 19 | 
chr2:10031713-10032753 REVERSE LENGTH=687
Length=687

 Score =  754 bits (408),  Expect = 0.0
 Identities = 497/541 (92%), Gaps = 2/541 (0%)
 Strand=Plus/Plus

Query  1    ATGGGAGGAATACCCGCTGCGGTTGCAACTGATATCTTCCCTTGTAAGATTGCTGCTGTT  60
            ||||||||||||||||||||| ||||  |||| || ||| ||||||||||| ||||||||
Sbjct  148  ATGGGAGGAATACCCGCTGCGCTTGCTGCTGACATATTCTCTTGTAAGATTTCTGCTGTT  207

Query  61   GTTTTCTTGGCAGCTTTCATGCCTGACACAAGAAATCCACCTGCTTATGTTTTCGAAAAG  120
            || |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct  208  GTCTTCTTGGCAGCTTTCATGCCTGACACAAGAAACCCACCTGCTTATGTTTTCGAAAAG  267

Query  121  CTGATCAGAAGCATTCCACGAGAGGAATGGTTGGATACCGTGTTTGGAAGGTACGGTAAT  180
            ||||||||||| ||||||||||| ||||||||||| |||| ||| ||||||||||| |||
Sbjct  268  CTGATCAGAAGTATTCCACGAGAAGAATGGTTGGACACCGCGTTCGGAAGGTACGGGAAT  327

Query  181  CCAGATTGTTCTCTAGAGTCTGCTCTTTTGGGACCAAATTTTATGGCCAAGAAAGTGTAT  240
            ||||||||| |||| ||||| ||||||||||||||||| || ||||||||||||||||||
Sbjct  328  CCAGATTGTCCTCTTGAGTCAGCTCTTTTGGGACCAAAGTTCATGGCCAAGAAAGTGTAT  387

Query  241  CAATTGTCTCCGGTAGAAGATCTTGAATTGGCCAAAATGTTGGTAAGGGTAAACCCGTTG  300
            |||  ||||||  |||||||||||||| |||| |||||||||||||||||||||||||||
Sbjct  388  CAACGGTCTCCAATAGAAGATCTTGAACTGGCGAAAATGTTGGTAAGGGTAAACCCGTTG  447

Query  301  GTTACGAACAATCTGGCAGGGGCAAGAAGCTTTACTGAGGAAGGATATGGATCGGTTACA  360
            |||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct  448  GTTACGAATAATCTGGCAGGGGCAAGAAGCTTTACTGGGGAAGGATATGGATCGGTTACA  507

Query  361  CGTATTTATATCATATGTGGAGAGGACAATATAGTACCTGAGGACTACCAGCGTTGGATG  420
            ||||||||||||||| |||||||||| |||||| ||||||||||||||||||||||||||
Sbjct  508  CGTATTTATATCATAAGTGGAGAGGATAATATATTACCTGAGGACTACCAGCGTTGGATG  567

Query  421  ATCAGTAACTTTCCGGTTAAAGAGGTAATGGAGATCAAAGATACAGATCATATGGCAATG  480
            ||| | ||||| ||||| ||||| |||||||||||||||||| |||||||||||||||||
Sbjct  568  ATCCGCAACTTCCCGGTGAAAGAAGTAATGGAGATCAAAGATGCAGATCATATGGCAATG  627

Query  481  TTCTCTAAGCCTCAAA-AATTATGTGCTCTTCTCTTGGAGATTGCGGATAAATACGCGTA  539
            ||||| |||||| ||  || ||||||||||||||||||||||||| ||||||||||| ||
Sbjct  628  TTCTCCAAGCCT-AAGGAACTATGTGCTCTTCTCTTGGAGATTGCAGATAAATACGCCTA  686

Query  540  A  540
            |
Sbjct  687  A  687



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 25870585705


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5