BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg899717
Length=756
Score E
Sequences producing significant alignments: (Bits) Value
AT2G23970.1 | Symbols: | Class I glutamine amidotransferase-li... 1247 0.0
AT4G30550.1 | Symbols: | Class I glutamine amidotransferase-li... 457 8e-128
> AT2G23970.1 | Symbols: | Class I glutamine amidotransferase-like
superfamily protein | chr2:10199698-10201081 FORWARD LENGTH=756
Length=756
Score = 1247 bits (675), Expect = 0.0
Identities = 729/756 (96%), Gaps = 0/756 (0%)
Strand=Plus/Plus
Query 1 ATGGTTAATGAGCAAAAGAGATTTGCTTTGTTTCTTGCCACAAGCGATTCAACGTTCGTG 60
|||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||
Sbjct 1 ATGGTTAATGAGCAAAAGAGATTTGCTTTGTTTCTTGCTACGAGCGATTCAACGTTCGTG 60
Query 61 AAGAAAACGTATGGAGGATATTTCAACGTGTTTGTTTCGACTTTTGGTGAAGATGGTGAG 120
|||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 AAGAAAGCGTATGGAGGCTATTTCAACGTGTTTGTTTCGACTTTTGGTGAAGATGGTGAG 120
Query 121 CAATGGGATCTGTTTCGAGTGATCGACGGTGAGTTTCCGGACGATAAGGATCTGGATAAG 180
||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||
Sbjct 121 CAATGGGATCTGTTTCGAGTGATCGACGGCGAGTTTCCTGACGATAAGGATCTGGATAAG 180
Query 181 TACGACGGTTTTGTTATCAGTGGAAGCCTTCATGATGCTTTTGGTGATGATGATTGGATC 240
||||| ||||||||||| |||||||||||| | |||||||||||||||||||||||||||
Sbjct 181 TACGATGGTTTTGTTATTAGTGGAAGCCTTAACGATGCTTTTGGTGATGATGATTGGATC 240
Query 241 GTTAAGCTTTGTTCTCTTTGCCAAAAACTTGACGACATGAAGAAGAAGGTTCTTGGTATC 300
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 241 GTTAAGCTTTGTTCTCTTTGCCAAAAGCTTGACGACATGAAGAAGAAGGTTCTTGGTATC 300
Query 301 TGCTTTGGCCACCAGATACTAAGTAGAATCAAAGGAGGGAAAATCGGAAGGGCGAGTATA 360
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
Sbjct 301 TGCTTTGGCCACCAGATACTAAGTAGAATCAAAGGAGGGAAAGTCGGAAGGGCGAGTAGA 360
Query 361 GGTTTGGATATGGGACTAAGAAGCATAACAATGGTTAAAGACGCGGTGAAACCGGGTGGT 420
||||||||||||||||||||||||||||||||||||| |||||||||||| || ||||||
Sbjct 361 GGTTTGGATATGGGACTAAGAAGCATAACAATGGTTACAGACGCGGTGAAGCCAGGTGGT 420
Query 421 TACTTTGGAAGCCAGATTCCGAAATCACTAGCCATTATAAAATGCCATCAAGATGAAGTT 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 421 TACTTTGGAAGCCAGATTCCGAAATCACTAGCCATTATAAAATGCCATCAAGATGAAGTT 480
Query 481 TTTGAACTCCCTGAGTCAGCCACATTGCTTGCTTATTCAGACAAATACAACGTTGAGATG 540
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 481 CTTGAACTCCCTGAATCAGCCACATTGCTTGCTTATTCAGACAAATACAACGTTGAGATG 540
Query 541 TGTTCATATGGAAACCACTTCCTAGGCATCCAAGGTCATCCTGAGTACAACAAAGAGATT 600
||||| |||||||||||||| |||||||||||||| ||||||||||||||||||||||||
Sbjct 541 TGTTCGTATGGAAACCACTTGCTAGGCATCCAAGGCCATCCTGAGTACAACAAAGAGATT 600
Query 601 CTTTTCGAGATCATTGATCGCGTCGTCAATTTGAAGTTGATGGAGCAAGAGTTTGCGGAT 660
|||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||
Sbjct 601 CTTTTCGAGATCATTGATCGTGTCGTCAATTTGAAGTTGATGGAGCAAGATTTTGCGGAT 660
Query 661 AAGGCCAAGGCAACGATGGATAATGCGGAACCAGATCGGAAGCAATGGCAGACTCTCTGC 720
||||| |||||||||||||| || ||||||||||||||||||||||||||||||||||||
Sbjct 661 AAGGCGAAGGCAACGATGGAAAACGCGGAACCAGATCGGAAGCAATGGCAGACTCTCTGC 720
Query 721 AAAAACTTTCTGAAAGGAAGATCCGAGCAAGTTTAA 756
||||||||||| ||||||||||||||||||||||||
Sbjct 721 AAAAACTTTCTCAAAGGAAGATCCGAGCAAGTTTAA 756
> AT4G30550.1 | Symbols: | Class I glutamine amidotransferase-like
superfamily protein | chr4:14925410-14926861 FORWARD LENGTH=1106
Length=1106
Score = 457 bits (247), Expect = 8e-128
Identities = 589/753 (78%), Gaps = 28/753 (4%)
Strand=Plus/Plus
Query 2 TGGTTAATGAGC--AA-AAGAGATTTGCTTTGTTTCTT-GCCACAAGCGATTCA-ACGTT 56
|||||| ||||| || ||||| |||||||||||| || || || | |||||| | |||
Sbjct 213 TGGTTATTGAGCAGAAGAAGAGGTTTGCTTTGTTT-TTAGCGACGTGTGATTCAGA-GTT 270
Query 57 CGTGAAGAAAACGTATGGAGGATATTTCAACGTGTTTGTTTCGACTTTTGGTGAAGATGG 116
||||||||| || || || || || ||||| || || ||||| ||||| || ||||| ||
Sbjct 271 CGTGAAGAAGACTTACGGTGGTTACTTCAATGTCTTCGTTTCAACTTTCGGCGAAGAAGG 330
Query 117 TGAGCAATGGGATCTGTTTCGAGTGATCGACGGTGAGTTTCCGGACGATAAGGATCTGGA 176
||||||||||||||| || ||||| |||||||| | ||||| ||||| || ||| | ||
Sbjct 331 TGAGCAATGGGATCTATTCCGAGTCATCGACGGACAATTTCCCGACGAGAATGATTTAGA 390
Query 177 TAAGTACGACGGTTTTGTTATCAGTGGAAG-CCTTCATGATGCTTTTGGTGATGATGATT 235
|||||||||||||| ||||||||||| || || ||||||||||| || || | ||||
Sbjct 391 CAAGTACGACGGTTTCGTTATCAGTGGTAGTCC-ACATGATGCTTTCGGAGACGCCGATT 449
Query 236 GGATCGTTAAGCTTTGTTCTCTTTGCCAAAAACTTGA-CGACATGAAGAAGAAGGTTCTT 294
|||| ||||||||||| |||| || |||||||| | ||||||||||||| |||||
Sbjct 450 GGATTGTTAAGCTTTGCGAAGTTTGTCAGAAACTTGATC-ACATGAAGAAGAAAGTTCTC 508
Query 295 GGTATCTGCTTTGGCCACCAGATACTAAGTAGAATCAAAGGAGGGAAAATCGGAAGGGCG 354
|| |||||||| |||||||||||| | | |||| | ||||| ||||| || ||||| ||
Sbjct 509 GGCATCTGCTTCGGCCACCAGATAATTACTAGAGTTAAAGGTGGGAAGATAGGAAGAGC- 567
Query 355 AGT-ATAGGTTTGGATATGGGACTAAGAAGCATAACAATGGTTAAAGACGCGGTGAAACC 413
| | | |||| ||||||||||| ||||||||||| || | |||||| | ||||
Sbjct 568 ACTCAAAGGTGCAGATATGGGACTTAGAAGCATAACCATAGCGAAAGACAATGAAAAACT 627
Query 414 GGGTGGTTACTTTGGAAG-C-CAGA-TTCCGA-AATCACTAGCCATTATAAAATGCCATC 469
| ||||||||||| || | || ||| | ||| |||| ||||||||||| ||||
Sbjct 628 ACGAGGTTACTTTGG-AGACGTTGAGGTCCCAGCATCTTTAGCTATTATAAAATGTCATC 686
Query 470 AAGATGAAGTTTTTGAACTCCCTGAGTCAGCCACATTGCTTGCTTATTCAGACAAATACA 529
| |||||||| || ||||| |||||||| || ||| | ||||||| ||| || || |
Sbjct 687 AGGATGAAGTGTTGGAACTTCCTGAGTCTGCTACACTACTTGCTTCTTCTGAGGTATGTA 746
Query 530 ACGTTGAGATGTGT-TCATA-TGGAAACCACTTCCTAGGCATCCAAGGTCATCCTGAGTA 587
|||| ||||||| | || || |||| | || || | | || ||||| ||||| |||||
Sbjct 747 ACGTCGAGATGT-TCTC-TATTGGAGATCATTTTTTCTGTATTCAAGGGCATCCAGAGTA 804
Query 588 CAACAAAGAGATTCT-TTTCGAGATCATTGATCGCGTCGTCAATTTGAAGTTGATGGAGC 646
|||||||||||||| ||| ||||| | || || ||| | ||| ||||| |||||||||
Sbjct 805 TAACAAAGAGATTCTGTTT-GAGATTGTGGACCGAGTCCTTAATATGAAGCTGATGGAGC 863
Query 647 AAGAGTTTGCGGATAAGGCCAAG-GCAACGATGGATAATGCGGAACCAGATC-GGAAGCA 704
||||||||||||||||||| ||| | | ||||||| | |||| ||||||| | ||| |
Sbjct 864 AAGAGTTTGCGGATAAGGCAAAGAGTA-CGATGGAGACTGCGCAACCAGA-CAGGATTCT 921
Query 705 ATGGCAGACTCTCTGCAAAAACTTTCTGAAAGG 737
|||||||| |||||||||||||| ||||||||
Sbjct 922 ATGGCAGAAGCTCTGCAAAAACTTCCTGAAAGG 954
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 36721161457
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5