BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg899725
Length=549
Score E
Sequences producing significant alignments: (Bits) Value
AT2G24020.1 | Symbols: | Uncharacterised BCR, YbaB family COG0... 870 0.0
AT4G30620.1 | Symbols: | Uncharacterised BCR, YbaB family COG0... 433 1e-120
> AT2G24020.1 | Symbols: | Uncharacterised BCR, YbaB family COG0718
| chr2:10217701-10219352 REVERSE LENGTH=800
Length=800
Score = 870 bits (471), Expect = 0.0
Identities = 524/550 (95%), Gaps = 2/550 (0%)
Strand=Plus/Plus
Query 1 ATGGCGTCGATGGCTGCGACCACCAATTTCACCAAATCTTTACTCTTTCCTTTCTCTCAT 60
||||||||||||||||| ||||||||||||||||||||| | |||||||| |||||||||
Sbjct 84 ATGGCGTCGATGGCTGCAACCACCAATTTCACCAAATCTATGCTCTTTCCATTCTCTCAT 143
Query 61 GTTTCAGGAAATGCGAGCTTGAATTCACAGAGAGGTACATGGCCAAAGCA-TCAAAAGTC 119
|||||||||||||||||||||||||| |||||| | |||||||||||||| | | |||||
Sbjct 144 GTTTCAGGAAATGCGAGCTTGAATTCGCAGAGAAGAACATGGCCAAAGCAGT-ACAAGTC 202
Query 120 TAAAAATGGTTATAGGTCTCTTCGTGTCAATGGATTATTCGGTGGTGGAAACAAAGATAA 179
|||||||||||| ||||||||||| || ||||||||||| || |||||||||||||||||
Sbjct 203 TAAAAATGGTTACAGGTCTCTTCGAGTGAATGGATTATTTGGAGGTGGAAACAAAGATAA 262
Query 180 TAACAGTGAAGATGGACAATCAAAGGCAGGGATATTTGGTAATATGCAGAATATGTATGA 239
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 263 TAACAGTGAAGATGGACAATCAAAGGCAGGAATATTTGGTAATATGCAGAATATGTATGA 322
Query 240 GACTGTGAAGAAAGCTCAAATGGTTGTTCAAGTCGAAGCTGTACGTGTCCAAAAAGAGTT 299
||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||
Sbjct 323 GACTGTGAAGAAAGCTCAAATGGTTGTTCAAGTGGAAGCTGTACGTGTTCAAAAAGAGTT 382
Query 300 AGCTGCCGCAGAATTTGATGGTTATTGTGAAGGCGAGCTTGTCAAGGTTACGTTATCAGG 359
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 383 AGCTGCCGCAGAATTTGATGGTTATTGTGCAGGCGAGCTTGTCAAGGTTACGTTATCAGG 442
Query 360 TAACCAGCAACCAATCCGTACTGATATAACCGAGGCAGCAATGGAATTAGGTTCTGAAAA 419
||||||||||||||||||||||||||| |||||||||||||||||| ||||||| |||||
Sbjct 443 TAACCAGCAACCAATCCGTACTGATATTACCGAGGCAGCAATGGAACTAGGTTCCGAAAA 502
Query 420 ACTGTCACAACTTGTCACAGAAGCATACAAGGACGCACACGCGAAGAGTGTGGTGGCTAT 479
||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 503 ACTATCACAACTTGTCACAGAAGCATACAAGGACGCACACGCCAAGAGTGTGGTGGCTAT 562
Query 480 GAAAGAGAGAATGAGTGACCTTGCGCAGAGCTTAGGCATGCCACCGGGTCTCAGCGAAGG 539
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 563 GAAAGAGAGAATGAGTGACCTTGCGCAGAGCTTAGGAATGCCACCGGGTCTCAGCGAAGG 622
Query 540 ACTGAAGTAA 549
| ||||||||
Sbjct 623 AATGAAGTAA 632
> AT4G30620.1 | Symbols: | Uncharacterised BCR, YbaB family COG0718
| chr4:14948586-14950072 REVERSE LENGTH=718
Length=718
Score = 433 bits (234), Expect = 1e-120
Identities = 343/394 (87%), Gaps = 13/394 (3%)
Strand=Plus/Plus
Query 136 TCTCTTCGTGTCAATGGATTATTCGGTGGTGGAAACAAA-GATAATAACAGTGAAGATGG 194
||||||||||| |||||||||||||| || ||||| ||| || ||||| | || |||||
Sbjct 173 TCTCTTCGTGTTAATGGATTATTCGGAGGCGGAAA-AAAGGACAATAA-A--GAGGATGG 228
Query 195 ACAATCAAAGGCAGGGATATT-T-GGTAATATGCAGAATATGTATGAGACTGTGAAGAAA 252
||||||||||||| ||| ||| | ||||| ||||||||| |||||||||| |||||||||
Sbjct 229 ACAATCAAAGGCA-GGA-ATTCTAGGTAACATGCAGAATTTGTATGAGACAGTGAAGAAA 286
Query 253 GCTCAAATGGTTGTTCAAGTCGAAGCTGT-ACGTGTCCAAAAAGAG-TTAGCTGCCGCAG 310
|||||||||||||||||||| || ||||| | | || || || ||| || |||| || |
Sbjct 287 GCTCAAATGGTTGTTCAAGTAGAGGCTGTTA-GAGTGCAGAAGGAGCTT-GCTGTTGCTG 344
Query 311 AATTTGATGGTTATTGTGAAGGCGAGCTTGTCAAGGTTACGTTATCAGGTAACCAGCAAC 370
||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||
Sbjct 345 AATTTGATGGTTATTGTCAAGGCGAGCTTGTCAAGGTTACATTATCAGGTAACCAGCAAC 404
Query 371 CAATCCGTACTGATATAACCGAGGCAGCAATGGAATTAGGTTCTGAAAAACTGTCACAAC 430
|||| || |||||||| || || ||||||||||| ||||||||||||||||| |||| |
Sbjct 405 CAATTCGCACTGATATCACTGATGCAGCAATGGAGTTAGGTTCTGAAAAACTTTCACTGC 464
Query 431 TTGTCACAGAAGCATACAAGGACGCACACGCGAAGAGTGTGGTGGCTATGAAAGAGAGAA 490
| ||||||||||||||||| |||||||| | |||||||| ||||||||||||| ||||
Sbjct 465 TGGTCACAGAAGCATACAAAGACGCACATTCAAAGAGTGTACTGGCTATGAAAGAAAGAA 524
Query 491 TGAGTGACCTTGCGCAGAGCTTAGGCATGCCACC 524
||||||| ||||||||||||||||| ||||||||
Sbjct 525 TGAGTGATCTTGCGCAGAGCTTAGGGATGCCACC 558
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 26322693028
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5