BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg899726
Length=1371
Score E
Sequences producing significant alignments: (Bits) Value
AT2G24030.1 | Symbols: | zinc ion binding;nucleic acid binding... 1825 0.0
> AT2G24030.1 | Symbols: | zinc ion binding;nucleic acid binding
| chr2:10220061-10222024 REVERSE LENGTH=1504
Length=1504
Score = 1825 bits (988), Expect = 0.0
Identities = 1258/1385 (91%), Gaps = 31/1385 (2%)
Strand=Plus/Plus
Query 1 ATGGAATTCAGATACAGAGCCATCGACAGTAATCGGCCACCTCCTGCGACGGAGACGACT 60
|||||||||||||||||||||||||| | |||||| ||||||||||||||||| |||||
Sbjct 15 ATGGAATTCAGATACAGAGCCATCGATAATAATCGCCCACCTCCTGCGACGGACACGACA 74
Query 61 CCATCTCAGTCGCCGAACCCGAGCTTCCCTTTCTTTTCGGCCCGATCAATGTCAGG--AA 118
||||||| ||||| ||| |||| ||| |||||||| |||| ||||||||| |||| ||
Sbjct 75 CCATCTCCGTCGCTGAAACCGAACTTTCCTTTCTTGTCGGAACGATCAATGCCAGGACAA 134
Query 119 -AAAGTGAGGAACAAGTTCGGGAAGCGATGATTCAACGGGAAATTGAGAAAGAAAAAATC 177
|||||||||| ||||||||||||||||| | |||| ||||||||||||||| |||||
Sbjct 135 CAAAGTGAGGATCAAGTTCGGGAAGCGATCA---AACGAGAAATTGAGAAAGAACAAATC 191
Query 178 CGTCAAGAGATCATTATTGCAGAAGCAGCGAGAAAACGAGAGCTTATAGCCGAGGTTTTA 237
||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||
Sbjct 192 CGTCAAGAGATCATTATCGCAGAAGCAGCGAGAAAACGAGAGCTTATAGCTGAGGTTTTA 251
Query 238 CAAGAGATGGCTATCGAGAGAGAGATGGCGATTA-GGCGAGTCTCTGACACCGGA-ATGT 295
||||||||||||||||||||||| ||||||| || | ||||| || |||| |||| ||||
Sbjct 252 CAAGAGATGGCTATCGAGAGAGAAATGGCGA-TACGACGAGTTTCAGACA-CGGAGATGT 309
Query 296 CGCTTGAGGAGAAGCTCATTATGTGGATCAATCAAAGGAAGCTTCCAAATCAGAATCAGA 355
| || ||||| ||||| | ||||||||||||||||||||||||||||||||| |||||||
Sbjct 310 CTCTAGAGGAAAAGCTAACTATGTGGATCAATCAAAGGAAGCTTCCAAATCAAAATCAGA 369
Query 356 ATCAGAACAACAACAACTTGTTCA-A-AGCTAAGTATAGTTACATTGATTCTCTGATGAA 413
||||| ||||||||| |||| | || |||||||||||||||||||||||||| ||
Sbjct 370 ATCAG---TTCAACAACTTTTTCAGACAG--AAGTATAGTTACATTGATTCTCTGATCAA 424
Query 414 CACAGGCTCTTACAACAGTCTAGTTACATCACCAATGATGCAATTGCCTCAACTCCAGCA 473
|||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||
Sbjct 425 CACAGGCTCTTACAACAGTCTACTTACATCACCAATGATGCAATTGCCTCAACTTCAGCA 484
Query 474 AATTTCTGAAGCTACTGGAACATCAATGTTGGAGTCTAACAAAGAGAAGTTGATTGTATT 533
||| ||||||||||| ||||||||||||||||||||||| |||||||| |||||||||||
Sbjct 485 AATGTCTGAAGCTACCGGAACATCAATGTTGGAGTCTAATAAAGAGAATTTGATTGTATT 544
Query 534 GAGTAGGGCTGATCA-TATAGGAGCAAAGCCTAAAGCAGACAGTGTTGGTACCATGCAAT 592
|| ||| |||||| | ||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 545 GAATAGAGCTGAT-ATTATAGGAGCTAAGCCTAAAGCAGACAGTGTTGGTACCATGCAAT 603
Query 593 TGCCTCAACTCCAGCAAATGCCTGAGACTACTACCGGAACATCAGTTTTGGAGTCTAACA 652
||||| |||| ||||||||||||||| |||| | |||||||||||||||||||||||||
Sbjct 604 TGCCTAAACTTCAGCAAATGCCTGAGGCTAC-A--GGAACATCAGTTTTGGAGTCTAACA 660
Query 653 AAGAGAAGTTAATTGTATTGGCTAGAGCTGATCCTGTAGGAGAAAAGCGTAAAGCAGAGG 712
||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 661 AAGAGCAGTTTATTGTATTGGCTAGAGCTGATCCTGTAGGAGAAAAGCGTAAAGCAGAGG 720
Query 713 ATACTCAAATTGGTTTGAACGAAGATCTTCAAGTGAAAAGGCAGAAAGCAAAAGAATCAG 772
||| ||||| |||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 721 ATATTCAAACTGGTTTGAACGAAGATCTTCAAGTGAAAAGGCCGAAAGCAAAAGAATCAG 780
Query 773 AAGCAAAGACGATGTCTTTGGAAAGCGGAGAGATAGTCTCTTCGAAGCTTCCTTGTTTGG 832
|||||||| ||||||||||||||| |||||| ||||||||||||||| ||||||||| |
Sbjct 781 AAGCAAAGGCGATGTCTTTGGAAACCGGAGAAATAGTCTCTTCGAAGGTTCCTTGTTCAG 840
Query 833 GGAAACTTGGCAGTGGAAAGAAAGTAGAAAGCAAGGTAAGAAGTAATTATAAGTTTTGGT 892
|||||||||||||||||||||||| |||| | ||| |||||| ||| | ||||||||||
Sbjct 841 GGAAACTTGGCAGTGGAAAGAAAGCAGAAGGTAAGCTAAGAACTAACCAGAAGTTTTGGT 900
Query 893 GTGAGATTTGTAAAGTTGGGACCTATTGTCAAACAGTCATGCGAGATCATGAGTTAGGTA 952
||||||||||||||||||||||||||||||||| ||||||| | ||||||||||||||||
Sbjct 901 GTGAGATTTGTAAAGTTGGGACCTATTGTCAAATAGTCATGAGGGATCATGAGTTAGGTA 960
Query 953 AAAAGCATAAGGCTGCTGTTACACAACAGAATGAAG-TACCTGAAGCTGCTTCAACCTCC 1011
||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||
Sbjct 961 AAAAGCATAAGGCTGCTGTTACACAACAGAATG-AGACACCTGAAGCTGCTTCAACCTCC 1019
Query 1012 TTATCCCCTGCTTCAGTTACTGCGCCGCAATCAGAAGCTACTACAGTACGTGAAGATGCT 1071
|||||||||||||| ||||| || |||||| ||||||| | || |||| ||||| |||||
Sbjct 1020 TTATCCCCTGCTTCCGTTACAGCACCGCAACCAGAAGCCATTAGAGTATGTGAAAATGCT 1079
Query 1072 AATCCGCAGGG---AAAAGTGGATGAAA-TGTCGGCGAAAGAAACAACGGGAAAGAAGAC 1127
||||||||||| |||||| ||||||| || ||||||||||||||||||||||||||||
Sbjct 1080 AATCCGCAGGGTCAAAAAGTAGATGAAATTG-CGGCGAAAGAAACAACGGGAAAGAAGAC 1138
Query 1128 AGAAGGTGAGACGAAAAAGAAAGG-AACGTTTTGGTGCAAAACTTGTAATATTCAGACGA 1186
| ||||||||| ||||||| |||| |||| ||||||||||||||||||||||||||||||
Sbjct 1139 AAAAGGTGAGAAGAAAAAG-AAGGAAACGGTTTGGTGCAAAACTTGTAATATTCAGACGA 1197
Query 1187 ATTCTGAGCAGACGATGAGGAATCATACGCTTGGGAAAAAACACATGACTTTGATTGAGA 1246
||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||
Sbjct 1198 ATTCTGAGCAGACGATGAGGAATCATACGCTTGGGAAAAAACACATGGCTTTGCTTGAGA 1257
Query 1247 AACAGCAGAAGAAACTCATTACCGTCCCAGTGAGATCTTTAAATGCTGATCCCGGAGAGA 1306
|||||||||| ||||||||||| ||||||||||||||| | ||||||||||| ||| |||
Sbjct 1258 AACAGCAGAATAAACTCATTACAGTCCCAGTGAGATCTCTGAATGCTGATCCAGGACAGA 1317
Query 1307 AGGAATCAGTTTCTATAGCAATGGATGATACAAAAGGTAACGTTCATTGCTTGGAAAAGT 1366
| |||||||| ||| ||||||||||||||||| ||||||| |||||||||||||| ||||
Sbjct 1318 AAGAATCAGTATCTCTAGCAATGGATGATACACAAGGTAAGGTTCATTGCTTGGAGAAGT 1377
Query 1367 CATAG 1371
|||||
Sbjct 1378 CATAG 1382
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 67519733025
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5