BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg899732

Length=492
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT3G60250.1 | Symbols: CKB3 | casein kinase II  beta chain 3 | ...   333    9e-91


> AT3G60250.1 | Symbols: CKB3 | casein kinase II  beta chain 3 
| chr3:22270337-22272113 REVERSE LENGTH=1359
Length=1359

 Score =  333 bits (180),  Expect = 9e-91
 Identities = 192/198 (97%), Gaps = 0/198 (0%)
 Strand=Plus/Plus

Query  289  GTGGAATCGGAAACTGATAGTGAAGGGTCAGATGTGAGTGGATCGGAGGGTGATGATACA  348
            ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| 
Sbjct  356  GTGGAATCGGAAACTGATAGTGAAGGGTCTGATGTGAGTGGATCGGAGGGTGATGATACG  415

Query  349  TCGTGGATCTCTTGGTTTTGTAATTTGAGAGGGAATGATTTCTTTTGTGAAGTCGATGAA  408
            |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct  416  TCGTGGATCTCTTGGTTTTGTAATTTGAGAGGGAATGATTTCTTCTGTGAAGTCGATGAA  475

Query  409  GATTATATTCAAGATGATTTCAATCTTTGTGGATTAAGTGGTCAAGTTCCTGACTATGAT  468
            |||||||||||||||||||||||||||||||| |||||||||||||| ||| ||||||||
Sbjct  476  GATTATATTCAAGATGATTTCAATCTTTGTGGTTTAAGTGGTCAAGTCCCTTACTATGAT  535

Query  469  TATGCACTTGATCTCATT  486
            ||||||||||||||||||
Sbjct  536  TATGCACTTGATCTCATT  553



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 23459346649


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5