BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg899741
Length=2964
Score E
Sequences producing significant alignments: (Bits) Value
AT2G24130.1 | Symbols: | Leucine-rich receptor-like protein ki... 4429 0.0
> AT2G24130.1 | Symbols: | Leucine-rich receptor-like protein
kinase family protein | chr2:10258148-10261220 FORWARD LENGTH=2943
Length=2943
Score = 4429 bits (2398), Expect = 0.0
Identities = 2787/2972 (94%), Gaps = 37/2972 (1%)
Strand=Plus/Plus
Query 1 ATGGATTCTTGTTCTTTGTTGTTTTTCTTGTTCTTGATCACTGTTATGACCGTTCTTGCT 60
||||||| ||||||||||||| || ||| |||||||||||||||||||||||||||||||
Sbjct 1 ATGGATTATTGTTCTTTGTTGGTTGTCTCGTTCTTGATCACTGTTATGACCGTTCTTGCT 60
Query 61 TCTAAAGAGAACGATCAAATCTCTTTGCTTTCTTTCAAATCATCCATTGTTTCAGATCCT 120
||||||||||||||||| | ||| | ||| |||| | || |
Sbjct 61 TCTAAAGAGAACGATCA--TGA----GCTAA-TAA-AAA--ATCC-T-----CA-A---- 99
Query 121 CATAACTCTCTAAGCAGTTGGGTTTCG-ctt-t-cttcttcttcttct-tcGCTTGTTGA 176
| | |||||||||||||||| |||| ||| | ||||||| |||||| | ||| |||||
Sbjct 100 -A-A-CTCTCTAAGCAGTTGGATTTCTTCTTCTTCTTCTTCGTCTTCTAT-GCTCGTTGA 155
Query 177 TGTTTGTAGTTGGTCTGGTGTGAAGTGTAACAAAGAGAGCACTCAAGTAATCGAGCTTGA 236
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 156 TGTTTGTAATTGGTCTGGTGTGAAGTGTAACAAAGAGAGCACTCAAGTAATCGAGCTTGA 215
Query 237 TATCAGTGGTAAAGATCTCGGCGGTGAAATCTCACCGTCGATCGCTAAGCTAACCGCTTT 296
||||||||||| |||||||||||| ||||||||||||||||||||||| ||||||| |||
Sbjct 216 TATCAGTGGTAGAGATCTCGGCGGCGAAATCTCACCGTCGATCGCTAATCTAACCGGTTT 275
Query 297 AACGGTTCTTGATCTTTCGAGAAACTTCTTCGTTGGAAAAATCCCACCTGAGATAGGCTC 356
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 276 AACGGTTCTTGATCTTTCGAGAAACTTCTTCGTTGGAAAAATCCCACCTGAGATAGGTTC 335
Query 357 ATTGCATAAAACCTTGAAGCAGCTAAGTCTCTCTGAGAATCTTTTACAAGGGGACATTCC 416
||||||| |||| ||||||||||||||||||||||||||||||||||| || |||||||
Sbjct 336 ATTGCATGAAACATTGAAGCAGCTAAGTCTCTCTGAGAATCTTTTACATGGAAACATTCC 395
Query 417 ACAAGAACTCGGTTCGCTTAACCGTCTTGTTTATCTCGATCTTGGAAGCAATCGATTAAC 476
|||||| || |||| |||||||||||||||||||||||||||||||||||| || ||||
Sbjct 396 ACAAGAGCTTGGTTTGCTTAACCGTCTTGTTTATCTCGATCTTGGAAGCAACCGGTTAAA 455
Query 477 CGGTTCAATCCCGGTTCAGCTCTTTTGCAACGGTTCTTCTTTATCTCTACAATACATTGA 536
||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||| ||
Sbjct 456 CGGTTCAATCCCGGTTCAGCTCTTTTGCAACGGCTCTTCTTCATCTCTACAATACATAGA 515
Query 537 TCTCTCCAACAATTCTTTAACCGGAGAAATCCCTTTAAAGAATCATTGTCAGCTCAAAGA 596
|| |||||||| |||||||||||||| ||||||||||| | |||||||| ||||||||
Sbjct 516 CCTTTCCAACAACTCTTTAACCGGAGAGATCCCTTTAAATTACCATTGTCACCTCAAAGA 575
Query 597 ACTTCGGTTTCTTCTTCTCTGGTCGAACAAGCTCACCGGTACTGTCCCTTCTTCTCTCTC 656
|||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||
Sbjct 576 ACTTCGGTTTCTTCTTCTCTGGTCCAACAAGCTCACCGGTACTGTCCCGTCTTCTCTCTC 635
Query 657 AAACTCTACGAATCTCAAATGGATGGATTTGGAGTCAAATCTGTTAACCGGAGAGTTACC 716
|||||||||||||||||| ||||||||||||||||||||| |||||| |||||||||||
Sbjct 636 AAACTCTACGAATCTCAAGTGGATGGATTTGGAGTCAAATATGTTAAGTGGAGAGTTACC 695
Query 717 TTCTCAAGTCATAAGCAAGATGCCACATCTTCAGTTTCTTTACCTTTCTTATAACCATTT 776
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 696 TTCTCAAGTCATAAGCAAGATGCCACAACTTCAGTTTCTTTACCTTTCTTATAACCATTT 755
Query 777 CATTAGCCACAACAATAACACCAACCTCGAACCTTTTTTCGCCTCTCTCGCCAATTCCTC 836
| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 756 CGTTAGCCACAACAATAACACAAACCTCGAACCTTTTTTCGCCTCTCTCGCCAATTCCTC 815
Query 837 TGACCTAGAAGAGCTTGAGTTAGCCGGAAATAGCCTCGGAGGAGAGATTTCTTCTTCCGT 896
||||||| |||||||||||||||||||||| |||||||||||||||||| ||||||||||
Sbjct 816 TGACCTACAAGAGCTTGAGTTAGCCGGAAACAGCCTCGGAGGAGAGATTACTTCTTCCGT 875
Query 897 AAGGCACCTCTCTGTAAATCTTGTACAGATTCATCTTGATCAAAACCGTATCCATGGCTC 956
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 876 AAGGCACCTCTCTGTAAATCTTGTGCAGATTCATCTTGATCAAAACCGTATCCATGGCTC 935
Query 957 TATACCACCAGAGATATCAAACCTTTTGAACCTAACCCTTCTAAACTTGTCGAGTAACCT 1016
|||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 936 TATACCTCCAGAGATATCAAACCTTTTGAACCTAACTCTTCTAAACTTGTCGAGTAACCT 995
Query 1017 CTTGTCCGGTCCAATCCCGCGTGAGCTCTGTAAGCTAAGCAAGCTTGAAAGGGTTTATCT 1076
|||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 996 CTTGTCCGGTCCTATCCCGCGTGAGCTCTGTAAGCTAAGCAAGCTCGAAAGGGTTTATCT 1055
Query 1077 CTCGAATAATCACTTAACCGGCGAAATCCCTATGGAACTCGGGGATATACCTCGTCTTGG 1136
||||||||||||| |||||||||||||||||||||||||||||||||| ||||| |||||
Sbjct 1056 CTCGAATAATCACCTAACCGGCGAAATCCCTATGGAACTCGGGGATATTCCTCGCCTTGG 1115
Query 1137 TCTTCTTGATGTTTCTAGAAACAAGCTCTCTGGTTCAATCCCTGATAGTTTTGCAAACCT 1196
|||||||||||||||||||||||| || ||||||||||||||||||||||| | ||||||
Sbjct 1116 TCTTCTTGATGTTTCTAGAAACAATCTTTCTGGTTCAATCCCTGATAGTTTCGGAAACCT 1175
Query 1197 TTCTCAGCTGAGAAGACTTCTTCTGTACGGAAACCATCTCTCTGGTACGGTTCCTCAAAG 1256
|||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||
Sbjct 1176 TTCTCAGCTGAGAAGACTTCTTCTGTACGGAAACCATCTCTCTGGTACTGTCCCTCAAAG 1235
Query 1257 CCTCGGAAAATGTATCAATCTTGAGATTCTTGATCTCTCTCACAACAACCTCTCAGGGAA 1316
|||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1236 CCTCGGCAAATGTATCAATCTTGAGATTCTTGATCTCTCTCACAACAACCTCACAGGGAC 1295
Query 1317 CATACCTGTTGAAGTTGTCTCCAATCTCAGAAACCTGAAGCTGTATCTTAACCTCTCTAG 1376
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1296 CATACCTGTTGAAGTTGTCTCCAATCTCAGAAACCTGAAGCTGTATCTCAACCTCTCTAG 1355
Query 1377 CAATCACTTAAGTGGGCCAATACCGTTGGAGCTAAGCAAAATGGATATGGTTCTCTCAGT 1436
||| |||||||| || |||||||| |||||||||||||||||||||||||||||||| ||
Sbjct 1356 CAACCACTTAAGCGGTCCAATACCTTTGGAGCTAAGCAAAATGGATATGGTTCTCTCCGT 1415
Query 1437 TGATCTTTCTTCCAACGAACTCTCAGGAAAGATTCCGCCTCAGCTCGGAAGCTGCATTGC 1496
|||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1416 TGATCTGTCTTCCAACGAACTCTCAGGGAAGATTCCGCCTCAGCTCGGAAGCTGCATTGC 1475
Query 1497 ATTAGAGCATTTGAATCTTTCAAGAAACAGTTTCTCCAGTACGCTTCCTGCATCATTAGG 1556
|||||||||| ||||||||||||||||| |||||||||||||||||||| ||||||||||
Sbjct 1476 ATTAGAGCATCTGAATCTTTCAAGAAACGGTTTCTCCAGTACGCTTCCTTCATCATTAGG 1535
Query 1557 CCAA-TTGCCATATCTGAAAGAGCTAGATGTATCTTCAAACAGATTAAACGGAGCTATAC 1615
|||| || ||||||||||||||||||||||| |||| |||||||||| |||||||||||
Sbjct 1536 CCAACTT-CCATATCTGAAAGAGCTAGATGTGTCTTTTAACAGATTAACCGGAGCTATAC 1594
Query 1616 CGCCTTCTTTTCAACAGTCTTCGACTCTCAAGCACTTGAATTTCTCCTTCAACTTGTTCT 1675
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1595 CGCCTTCTTTTCAACAGTCTTCGACTCTCAAGCACTTGAATTTCTCCTTCAACTTGCTCT 1654
Query 1676 CTGGAAATGTATCTGACAAAGGATCATTCTCTAAGCTGACTATTGAGTCTTTTCTTGGAG 1735
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1655 CTGGTAATGTATCTGACAAAGGATCATTCTCTAAGCTGACTATTGAGTCTTTTCTTGGAG 1714
Query 1736 ATTCTCTCTTGTGTGGCTCTATAAAAGGGATGCAAGCTTGCAAGAAGAAACACAAGTACC 1795
|||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||
Sbjct 1715 ATTCTCTCTTGTGTGGCTCTATAAAAGGCATGCAAGCCTGCAAGAAGAAACACAAGTACC 1774
Query 1796 CTTCTGTTATTCTACCGGTTCTGTTATCATTGATTGTAACTCCTTTTCTGTGTGTTTTTG 1855
|||||||| ||||||||||||||||||| ||||| | ||||||| |||||||||| || |
Sbjct 1775 CTTCTGTTCTTCTACCGGTTCTGTTATCGTTGATCGCAACTCCTGTTCTGTGTGTGTTCG 1834
Query 1856 GGTACCCTCTGGTCCAAAGATCAAGATTTGGAAAGAATCTAACAGTTTATGACAAAGAAG 1915
|||||||| ||||||||||||||||||||||||||||||||||||| |||| ||||||||
Sbjct 1835 GGTACCCTTTGGTCCAAAGATCAAGATTTGGAAAGAATCTAACAGTGTATGCCAAAGAAG 1894
Query 1916 AGGTGGAAGACGAAGAAAAACAGAACCGAAATGACCCGAAGTACCCGAGAATATCGTATC 1975
||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1895 AGGTGGAAGACGAGGAAAAACAGAACCAAAATGACCCGAAGTACCCGAGAATATCGTATC 1954
Query 1976 AACAGCTCATAACAGCAACTGGAGGTTTCAATGCTTCTAGCTTGATTGGTTCAGGGAGAT 2035
| ||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1955 AGCAGCTCATAGCAGCTACTGGAGGTTTCAATGCTTCTAGCTTGATTGGTTCAGGGAGAT 2014
Query 2036 TTGGTCATGTTTACAAGGGAGTTCTCAGGAACAACACTAAGATTGCAGTTAAAGTACTTG 2095
||||||||||||| |||||||||||||| |||||||| ||| | || || ||||||||||
Sbjct 2015 TTGGTCATGTTTATAAGGGAGTTCTCAGAAACAACACGAAGGTCGCGGTAAAAGTACTTG 2074
Query 2096 ATCCAAAGACCGCAGTGGAGTTTTCGGGGAGTTTCAAAAGAGAATGTCAGATCTTGAAGC 2155
|||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 2075 ATCCAAAGACCGCACTGGAGTTCTCGGGGAGTTTCAAAAGAGAATGTCAGATCTTGAAGA 2134
Query 2156 GGACAAGGCACAGGAACTTGATCAGGATCATCACAACTTGCAGAAAACCTGGTTTCAAGG 2215
| ||||| |||||||||||||||||||||||||| || ||||| |||||||||||||| |
Sbjct 2135 GAACAAGACACAGGAACTTGATCAGGATCATCACTACGTGCAGCAAACCTGGTTTCAACG 2194
Query 2216 CTCTTGTTCTGCCACTGATGCCAAATGGAAGCTTGGAGAGGCACTTATACCCGGGAGAGT 2275
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2195 CTCTTGTTCTGCCACTGATGCCAAATGGAAGCTTGGAGAGGCACTTATACCCGGGAGAGT 2254
Query 2276 ACTTGAGCAAGAACTTGGATTTGATTCAGTTGGT-ATATATATGCAGCGATGTCGCTGAA 2334
||| |||||||||||| ||||||||||||||||| | |||||||||||||||| ||||||
Sbjct 2255 ACTCGAGCAAGAACTTAGATTTGATTCAGTTGGTGA-ATATATGCAGCGATGTTGCTGAA 2313
Query 2335 GGAATAGCTTACTTGCATCACTATTCACCTGTCAAAGTCATTCACTGTGATCTCAAACCG 2394
|||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||
Sbjct 2314 GGAATAGCTTACTTGCATCACTATTCACCTGTAAAAGTTGTTCACTGTGATCTCAAACCG 2373
Query 2395 AGCAATATCCTTCTCGACGATGAAATGACGGCTCTGGTTACGGATTTCGGGATTTCAAGA 2454
|||||||||||||| || ||||||||||| ||||||||||||||||| ||||||||||||
Sbjct 2374 AGCAATATCCTTCTTGATGATGAAATGACCGCTCTGGTTACGGATTTTGGGATTTCAAGA 2433
Query 2455 TTAGTTCAAGGCGTTGAAGAAACGGTTTCTACAGATGATTCAGTGTCATTTGGCTCAACA 2514
|| |||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 2434 TTGGTTCAAGGTGTTGAAGAAACAGTTTCTACAGATGATTCAGTGTCATTTGGCTCAACA 2493
Query 2515 GATGGATTGTTATGTGGATCAGTCGGTTACATTGCACCAGAATACGGGATGGGGAAACGC 2574
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2494 GATGGATTGTTATGTGGATCAGTCGGTTACATTGCACCAGAATACGGGATGGGGAAACGC 2553
Query 2575 GCATCGACACATGGAGATGTGTACAGTTTTGGTGTTCTCCTGCTAGAGATTGTAAGCGGA 2634
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2554 GCATCGACACATGGAGATGTGTACAGTTTTGGTGTTCTCCTGCTAGAGATTGTAAGCGGA 2613
Query 2635 AGGAGACCAACGGATGTTCTTGTCAATGAAGGATCAAACTTACATGAGTTTATGAAGTCA 2694
||||||||||| |||||||||||||||||||| |||| |||||||||||||||||||||
Sbjct 2614 AGGAGACCAACAGATGTTCTTGTCAATGAAGGTTCAAGCTTACATGAGTTTATGAAGTCG 2673
Query 2695 CATTACCC-GAATTCTCTAGAGGAAATCATCGAACAAGCGTTGA-TCAGATGGAAACCGC 2752
|||||||| || ||||||||||| |||||||||||||||||||| | |||||||||||||
Sbjct 2674 CATTACCCCGA-TTCTCTAGAGGGAATCATCGAACAAGCGTTGAGT-AGATGGAAACCGC 2731
Query 2753 AGGGGAAACCAGAGAGATGTGAGAAGCTATGGAGAGAAGTCATATTGGAAATGATTGAGT 2812
| ||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2732 AAGGGAAACCAGAAAAATGTGAGAAGCTATGGAGAGAAGTCATATTGGAAATGATTGAGT 2791
Query 2813 TAGGATTGATATGTACTCAATACAATCCTTCAACTAGGCCTGACATGCTCGATGTCGCAC 2872
|||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 2792 TAGGATTGGTATGTACTCAATACAATCCTTCAACTAGGCCTGACATGCTTGATGTCGCAC 2851
Query 2873 ACGAGATGGGACGGCTTAAAGAGTATCTATTTGCTTGTCCTTCTCTTTTGCATTTTTCAT 2932
|||| ||||||||||||||||| ||| ||||||||||||||||||| |||||||||||||
Sbjct 2852 ACGAAATGGGACGGCTTAAAGAATATTTATTTGCTTGTCCTTCTCTATTGCATTTTTCAT 2911
Query 2933 CTCAAGAAACACAAGGAGAAGCTAGTTCATAA 2964
||||||||||||||||||||||||||||||||
Sbjct 2912 CTCAAGAAACACAAGGAGAAGCTAGTTCATAA 2943
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 147340311591
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5