BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg899762

Length=573
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT1G06690.1 | Symbols:  | NAD(P)-linked oxidoreductase superfam...   436    8e-122
  AT4G18810.2 | Symbols:  | NAD(P)-binding Rossmann-fold superfam...   207    7e-53 


> AT1G06690.1 | Symbols:  | NAD(P)-linked oxidoreductase superfamily 
protein | chr1:2049602-2052154 REVERSE LENGTH=1389
Length=1389

 Score =  436 bits (236),  Expect = 8e-122
 Identities = 278/299 (93%), Gaps = 0/299 (0%)
 Strand=Plus/Plus

Query  224  ACAGGAAATTGAAGGCTGCTAAAGGTGCTTTCGATACCAGTCTTGACAACGGTATTGATT  283
            |||| ||||||||||| ||||||||||||||||| |||||||||||||||||||||||||
Sbjct  357  ACAGAAAATTGAAGGCGGCTAAAGGTGCTTTCGACACCAGTCTTGACAACGGTATTGATT  416

Query  284  TTTTCGATACCGCTGAAGTTTATGGTTCCAAGTTTTCTCTGGGTGCTATAAGCTCTGAAA  343
            ||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct  417  TTTTCGATACCGCAGAAGTTTATGGTTCCAAGTTTTCCCTGGGTGCTATAAGCTCTGAAA  476

Query  344  CTCTTTTAGGAAGGTTCATCCGTGAAAGAAAAGAGAGATTTTACGGAGCTGAGATTTCAG  403
            ||||||||||||| ||||||||||| ||||||||||||| |  |||||||||| |||| |
Sbjct  477  CTCTTTTAGGAAGATTCATCCGTGAGAGAAAAGAGAGATATCCCGGAGCTGAGGTTTCGG  536

Query  404  TTGCATCAAAGTTTGCTGCATTGCCATGGCGATTGGGTCGTGAAAATGTTATCACTGCCC  463
            ||||| | |||||||||||||||||||||||||| |||||||||| |||| |||||||||
Sbjct  537  TTGCAACCAAGTTTGCTGCATTGCCATGGCGATTTGGTCGTGAAAGTGTTGTCACTGCCC  596

Query  464  TTAAAGATTCCCTTTCCCTGCTCGAGCTTTCATCTGTAGATCTCTATCAACTCCATTGG  522
            |||||||||||||||||| ||| |||||||||||||| |||||||||||||| ||||||
Sbjct  597  TTAAAGATTCCCTTTCCCGGCTTGAGCTTTCATCTGTTGATCTCTATCAACTGCATTGG  655


> AT4G18810.2 | Symbols:  | NAD(P)-binding Rossmann-fold superfamily 
protein | chr4:10322156-10325816 REVERSE LENGTH=2072
Length=2072

 Score =  207 bits (112),  Expect = 7e-53
 Identities = 123/128 (96%), Gaps = 1/128 (1%)
 Strand=Plus/Plus

Query  62    TTCCGTTTAGTGAGCCTTTCACGGTAGATCCTGAGAATCCTCCACCGGAGCAAGACTACA  121
             |||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct  1739  TTCCGTTTAGCGAGCCTTTCACGGTAGATCCTGAGAATCCTCCACCGGAGAAAGACTACA  1798

Query  122   ATGAGTATTTCAAGAATCTGAAAGATGGAATCACCGGTAAAGAAGCTTTTGAACAGAGCA  181
             ||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||
Sbjct  1799  ATGAGTATTTCAAGACTCTGAAAGATGGAATCACCGGTAAAGAAGCTTTAGAACAGAGCA  1858

Query  182   CTGT-GCA  188
             |||| |||
Sbjct  1859  CTGTTGCA  1866



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 27528312556


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5