BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg899771

Length=168
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT1G16700.1 | Symbols:  | Alpha-helical ferredoxin | chr1:57097...   220    2e-57


> AT1G16700.1 | Symbols:  | Alpha-helical ferredoxin | chr1:5709725-5711902 
FORWARD LENGTH=1061
Length=1061

 Score =  220 bits (119),  Expect = 2e-57
 Identities = 127/131 (97%), Gaps = 0/131 (0%)
 Strand=Plus/Plus

Query  3    TTTTTCAGGGCAAGCCTTACAGGGATCTCATCTCTGTGGGCTACAGTCCCGTGCTATATC  62
            ||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||
Sbjct  241  TTTTTCAGGGCAAGGTTTACAGGGATCTCATCTCTGTGGGCTACAGTCCCGTGCTATATC  300

Query  63   TTATGGAAGCAACAAAGATGATGAAGAAGCTGAGCAACTTGCTAAAGAGATCTCCAAGGA  122
            |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct  301  TTATGGAAGCAACAAAGATGATGAAGAAGCTGAGCAGCTTGCTAAAGAGATCTCCAAGGA  360

Query  123  TTGGAGTACTG  133
             ||||||||||
Sbjct  361  CTGGAGTACTG  371



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 7293695895


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5