BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg899775

Length=411
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT2G24290.1 | Symbols:  | Protein of unknown function (DUF1068)...   634    0.0  


> AT2G24290.1 | Symbols:  | Protein of unknown function (DUF1068) 
| chr2:10338679-10340121 FORWARD LENGTH=884
Length=884

 Score =  634 bits (343),  Expect = 0.0
 Identities = 383/402 (95%), Gaps = 3/402 (1%)
 Strand=Plus/Plus

Query  10   AGCAGCAACTTCATTTGTCCTCCTTGCGAGATCTGCGATTGTCCTCCTCCTTTGTCTCTC  69
            |||| ||||| ||||||||||||||  | | ||||||||| |||||||||||||||||||
Sbjct  224  AGCACCAACTCCATTTGTCCTCCTT--GTG-TCTGCGATTTTCCTCCTCCTTTGTCTCTC  280

Query  70   CTCCAGATTGCTCCCGGGCTTGCAAACCTCTCTATTACAGGTTGTGGAAGCAATGATCCA  129
            ||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||
Sbjct  281  CTCCAGATTGCTCCCGGGCTTGCAAACCTCTCTATTACAGGTTGTGGCAGCGATGATCCA  340

Query  130  GAGCTCAAAGAGGAGATGGAGAAGCAGTTTGTTGATCTTCTCACAGAAGAGCTGAAGCTT  189
            ||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||
Sbjct  341  GAGCTCAAAGAGGAGATGGAGAAGCCGTTTGTGGATCTTCTCACAGAAGAGCTGAAGCTT  400

Query  190  CAAGAAGCAGTTGCAGACGAGCATAGTCATCACATGAATGTTACACTTGCCGAAGCTAAA  249
            ||||||||||| |||||||||||||||| ||| |||||||||||||||||||||||||||
Sbjct  401  CAAGAAGCAGTGGCAGACGAGCATAGTCGTCATATGAATGTTACACTTGCCGAAGCTAAA  460

Query  250  AGGGTTGCTTCACAGTACCAAAAGGAGGCTGAGAAGTGTAACGCTGCCACGGAAATTTGT  309
            || ||||||||||||||||||||||||||||||||||||||||||||||| |||||||| 
Sbjct  461  AGAGTTGCTTCACAGTACCAAAAGGAGGCTGAGAAGTGTAACGCTGCCACTGAAATTTGC  520

Query  310  GAATCAGCTAGAGAGAGAGCTCAAGCATTGTTGCTCAAAGAGCGGAAGATCACTTTTTTG  369
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  521  GAATCAGCTAGAGAGAGAGCTCAAGCATTGTTGCTCAAAGAGCGGAAGATCACTTTTTTG  580

Query  370  TGGGAACGCATAGCTCGGCAATTAGGTTGGGAAGGTGAGTAA  411
            ||||| |||| |||||||||||||||||||||||||||||||
Sbjct  581  TGGGAGCGCAGAGCTCGGCAATTAGGTTGGGAAGGTGAGTAA  622



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 19453618863


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5