BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg899799

Length=342
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT1G70160.1 | Symbols:  | unknown protein; FUNCTIONS IN: molecu...   516    6e-146


> AT1G70160.1 | Symbols:  | unknown protein; FUNCTIONS IN: molecular_function 
unknown; INVOLVED IN: biological_process unknown; 
LOCATED IN: endomembrane system; EXPRESSED IN: 24 plant 
structures; EXPRESSED DURING: 15 growth stages; BEST Arabidopsis 
thaliana protein match is: unknown protein (TAIR:AT4G27020.1); 
Has 108 Blast hits to 108 proteins in 20 species: Archae 
- 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 89; 
Viruses - 0; Other Eukaryotes - 19 (source: NCBI BLink). | 
chr1:26419949-26422529 FORWARD LENGTH=1966
Length=1966

 Score =  516 bits (279),  Expect = 6e-146
 Identities = 321/342 (94%), Gaps = 0/342 (0%)
 Strand=Plus/Plus

Query  1     AATAAACGACTCGGTACTGAGGATCTGAATTTGTGTGGGATACTTGAAGAAACAGCGAGG  60
             ||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||
Sbjct  1348  AATAAACGACTCGGTACTGAGGATCTGGATTTGTATGGGATACTTGAAGAAACAGCGAGG  1407

Query  61    CGTGGAATTTCATTCGATGAATTACTCACCATCCCTGAACAGGATGAATGGGTTTATAGT  120
             |||||||| ||||| ||||| |||||||||||||||||||||||||| ||||||||||| 
Sbjct  1408  CGTGGAATGTCATTTGATGAGTTACTCACCATCCCTGAACAGGATGAGTGGGTTTATAGC  1467

Query  121   GACGGGAAATCAACATCATGTGTTGCTTTCATCCTTGCAATGTACAAAGCCGCTGGTGTA  180
             ||||| ||||| ||| |||||||||||||||||||||||||||||||||| |||||| ||
Sbjct  1468  GACGGTAAATCGACAACATGTGTTGCTTTCATCCTTGCAATGTACAAAGCTGCTGGTATA  1527

Query  181   TTCGGCCCTCTCGCTAATCACATTCAAGTCATTGAATTCACTATCCGAGATGCGTACACT  240
             |||| |||||||||| ||||||||||||||| ||||||||||||||||||||||||||||
Sbjct  1528  TTCGACCCTCTCGCTGATCACATTCAAGTCACTGAATTCACTATCCGAGATGCGTACACT  1587

Query  241   CCGAAGTTATTTGAGTCTAACCAGACTCGACTACCGAGTTGGTGCAACACAGAGGAAGAG  300
             | |||||||||||||||||||||||||||  ||||||||||||||||||| ||||||| |
Sbjct  1588  CTGAAGTTATTTGAGTCTAACCAGACTCGGTTACCGAGTTGGTGCAACACCGAGGAAGGG  1647

Query  301   AAGCTTGACTTCTGTCATATTCTAGGTGAATACAGAATGGAG  342
             ||||||||||||||||| ||||||||||||||||||||||||
Sbjct  1648  AAGCTTGACTTCTGTCAAATTCTAGGTGAATACAGAATGGAG  1689



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 15985144182


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5