BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg899802
Length=480
Score E
Sequences producing significant alignments: (Bits) Value
AT3G14400.1 | Symbols: UBP25 | ubiquitin-specific protease 25 |... 361 4e-99
> AT3G14400.1 | Symbols: UBP25 | ubiquitin-specific protease 25
| chr3:4811532-4815515 REVERSE LENGTH=2712
Length=2712
Score = 361 bits (195), Expect = 4e-99
Identities = 250/276 (91%), Gaps = 5/276 (2%)
Strand=Plus/Plus
Query 159 TGTCGTCAAGGAGATTTTTGGTGGTGCTTTGCAGAGCCAGATCAAGTGTTTGTCATGTGG 218
|||||| ||||||||||||||||||||||||||||||||| ||||||||||||| |||||
Sbjct 755 TGTCGTGAAGGAGATTTTTGGTGGTGCTTTGCAGAGCCAGGTCAAGTGTTTGTCTTGTGG 814
Query 219 TGCCGAGTCAAATACAGCCGATGAGATTATGGATATCAGTCTTGAAATTTTGCATAGTAT 278
||| ||||| |||| |||||||||||||||||||||||||||||| |||||||| ||||
Sbjct 815 TGCGGAGTCTAATAAAGCCGATGAGATTATGGATATCAGTCTTGAGATTTTGCAGAGTAG 874
Query 279 CTCTATCAAGGAGTCTA-TGCaaaaaaaaTTTCAATCAGAGATTTTAGATGGCAACAATA 337
|||| | |||||||| | ||||||| |||||||||||||||||||||||||||||||
Sbjct 875 CTCTGTGAAGGAGTC-ATTGCAAAAGTTCTTTCAATCAGAGATTTTAGATGGCAACAATA 933
Query 338 AGTATATATGCGAGACCTGTGATAAACTGGTGACGGCGAGGAAGCAGATGTCGTCTATAC 397
|||||| ||||||| ||||||| ||||||||||||||||||||||||||||| | ||||
Sbjct 934 AGTATAGATGCGAGTCCTGTGAAAAACTGGTGACGGCGAGGAAGCAGATGTC-T--ATAC 990
Query 398 TCCAAATGCCTAATATCCTTGTTATCCAATTGAAAA 433
| ||| |||||||||||||||||||||||||||||
Sbjct 991 TGCAAGCGCCTAATATCCTTGTTATCCAATTGAAAA 1026
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 22856536885
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5