BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg899811
Length=813
Score E
Sequences producing significant alignments: (Bits) Value
AT5G13210.1 | Symbols: | Uncharacterised conserved protein UCP... 435 4e-121
AT3G24780.1 | Symbols: | Uncharacterised conserved protein UCP... 363 2e-99
> AT5G13210.1 | Symbols: | Uncharacterised conserved protein UCP015417,
vWA | chr5:4214504-4216686 FORWARD LENGTH=2183
Length=2183
Score = 435 bits (235), Expect = 4e-121
Identities = 347/401 (87%), Gaps = 8/401 (2%)
Strand=Plus/Plus
Query 371 TAGCTGCTGGTGCTGTGTTACCTCACGAGATAATCAGAGTTTTAGATGGTGGAGAAGGTG 430
||||||||||||||||||| ||||| ||||||||||||| ||||| |||||||| ||||
Sbjct 1295 TAGCTGCTGGTGCTGTGTTGCCTCATGAGATAATCAGAGAGTTAGACGGTGGAGACGGTG 1354
Query 431 GACAAGTAGCTGAGCTGCAGTGGAAACA-AATGGTGGATGATCTGAAAGAGAAAGGTTCT 489
|||||||||| |||||||| ||| || | || ||| |||||| |||||||||||||||||
Sbjct 1355 GACAAGTAGCAGAGCTGCAATGG-AAGAGAACGGTAGATGATATGAAAGAGAAAGGTTCT 1413
Query 490 TTGAGGAATTATATCGCTATCTGTGACGTTTCAGGGTCTATGAATGGTGATTCAATGGAG 549
|||||||||| ||| ||| ||||||||||||||||||||||||||||||| ||||||||
Sbjct 1414 TTGAGGAATTGTATAGCTGTCTGTGACGTTTCAGGGTCTATGAATGGTGAACCAATGGAG 1473
Query 550 GTTTCAGTCGCTTTGGGTCTGCTAGTCTCAGAGTTATCTGAAGAGCCATGGAGAGGAAAG 609
|||| || |||||||||||||||||||| ||| |||||||||||||||||| |||||||
Sbjct 1474 GTTTGTGTGGCTTTGGGTCTGCTAGTCTCTGAGCTATCTGAAGAGCCATGGAAAGGAAAG 1533
Query 610 CTTATAACTTTCAGTCAAAACCCGGAGATGCGCTTGGTGACAGGAGATGA-CT-TGAGAT 667
|| ||||||||||| ||||| |||||| ||| ||||||| |||||| || || | | |
Sbjct 1534 CTAATAACTTTCAGCCAAAATCCGGAGTTGCATTTGGTGAAAGGAGACGATCTGT-AC-T 1591
Query 668 CGAAATCAGAGTTTGTGAGGAATATGCAATGGGGAATGAACACTGTTTTTCAGAAAGTGT 727
| ||| |||||||||| | || ||||||||||| |||||||||| ||||||||||||||
Sbjct 1592 CAAAAACAGAGTTTGTTAAAAAAATGCAATGGGGTATGAACACTGATTTTCAGAAAGTGT 1651
Query 728 TTGACTTGATTCT-GAGAGTTGTTGTAAAAGGGAAGCTGAA 767
|||| |||||||| | |||| | ||| ||| |||||||||
Sbjct 1652 TTGATTTGATTCTTG-GAGTGGCCGTACAAGAGAAGCTGAA 1691
> AT3G24780.1 | Symbols: | Uncharacterised conserved protein UCP015417,
vWA | chr3:9049446-9051593 FORWARD LENGTH=2148
Length=2148
Score = 363 bits (196), Expect = 2e-99
Identities = 318/376 (85%), Gaps = 12/376 (3%)
Strand=Plus/Plus
Query 371 TAGCTGCTGGTGCTGTGTTACCTCACGAGATAATCAGAGTTTTAGATGGTGGAGAAGGTG 430
|||| || ||||||||||||||||||||||||||||||| ||| | || ||||| ||||
Sbjct 1388 TAGCCGCCGGTGCTGTGTTACCTCACGAGATAATCAGAGAGTTAAACGGCGGAGACGGTG 1447
Query 431 GACAA-GTAGCTGAGCTGCAGTGGAAACAAATGGTGGATGATCTGAAAGAGAAAGGTTCT 489
| ||| || ||||||||||| ||||||| |||||| || || || |||||||||||||||
Sbjct 1448 G-CAAAGTCGCTGAGCTGCAATGGAAACGAATGGTTGACGACCTTAAAGAGAAAGGTTCT 1506
Query 490 TTGAGGAATTATATCGCTATCTGTGACGTTTCAGGG-TCTATGAATGGTGATTCAATGGA 548
|||| || | || ||||| ||||||||||| ||| |||||||||||||| |||||||
Sbjct 1507 TTGACCAACTGCATGGCTATATGTGACGTTTC-GGGATCTATGAATGGTGAGCCAATGGA 1565
Query 549 GGTTTCAGTCGCT-TTGGGTCTGCTAGTCTCAGAGTTATCTGAAGAGCCATGGAGAGGAA 607
|||||||||||| |||| | |||||||||| ||| |||| ||||||||||||| |||||
Sbjct 1566 GGTTTCAGTCGCCCTTGGAT-TGCTAGTCTCTGAGCTATCAGAAGAGCCATGGAAAGGAA 1624
Query 608 AGCTTATAACTTTCAGTCAAAACCCGGAGA-TGCGCTTGGTGACAGGAGATGACTTGAGA 666
|||||||||| ||||| |||| || || | ||| ||||||| |||||| || ||||||
Sbjct 1625 AGCTTATAACATTCAGACAAAGTCCTGA-ACTGCATTTGGTGAAAGGAGACGATTTGAGA 1683
Query 667 TCGAAATCAGAGTTTGTG-AGGAATATGCAATGGGGA-ATGAACACTGTTTTTCAGAAAG 724
|| ||| ||||||||||| || | |||||||||| | |||||||||| |||||||||||
Sbjct 1684 TCAAAAACAGAGTTTGTGGAG-AGCATGCAATGGG-ATATGAACACTGATTTTCAGAAAG 1741
Query 725 TGTTTGACTTGATTCT 740
||||||| ||||||||
Sbjct 1742 TGTTTGATTTGATTCT 1757
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 39584507836
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5