BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg899815
Length=699
Score E
Sequences producing significant alignments: (Bits) Value
AT5G23490.1 | Symbols: | unknown protein; BEST Arabidopsis tha... 555 3e-157
AT5G23510.2 | Symbols: | unknown protein; LOCATED IN: cellular... 527 6e-149
> AT5G23490.1 | Symbols: | unknown protein; BEST Arabidopsis thaliana
protein match is: unknown protein (TAIR:AT5G08440.1);
Has 202 Blast hits to 197 proteins in 48 species: Archae -
0; Bacteria - 13; Metazoa - 25; Fungi - 9; Plants - 109; Viruses
- 0; Other Eukaryotes - 46 (source: NCBI BLink). | chr5:7919438-7926628
FORWARD LENGTH=2712
Length=2712
Score = 555 bits (300), Expect = 3e-157
Identities = 435/494 (88%), Gaps = 33/494 (7%)
Strand=Plus/Plus
Query 207 TTGTGATTTTCAGTGGGTATGTCATCTAGAAGATGGATCTGTGAATTACATTGATGGAGC 266
|||| ||||| ||||||| ||||| |||||||||||||||||||||||||||||||||||
Sbjct 2004 TTGTAATTTTGAGTGGGTCTGTCACCTAGAAGATGGATCTGTGAATTACATTGATGGAGC 2063
Query 267 AAAGCAGCCAAATTACCTTGTCACTGCTGATGATGTTCATTTATATCTTGCTATTGAGGT 326
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 2064 AAAGCAGCCAAATTACCTTGTCACTGCTGATGATGTTGATTTATATCTTGCTATTGAGGT 2123
Query 327 TCAGCCTTTGGATGACAGGAACCGAAAGGGGGAGCTTGTGAAGGTTTTTGCCAATAATAA 386
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 2124 TCAGCCTTTGGATGACAGGAACCGAAAGGGGGAGCTTGTGAAGGTTTTTGCCAATGATAA 2183
Query 387 TCGCAATTCGCAAGATCGCTTGCCTAATCCTCTTTTTATTTTCGCAGTTCCAGAGATGCA 446
| | ||||||| ||||||| | ||| | || |||| || ||
Sbjct 2184 -C-C-----GCAAGATTGCTTGCC-A-TCCAGAT---AT----GCAG----AG-----CA 2218
Query 447 GAGCAATATAGAGAAGACTCTTCATACTGGTCATGCTTCATACAAAGTTTCTCATG-GGA 505
| ||||||||||||||||||||||||||||||||||||||||||||||| || ||
Sbjct 2219 -A----TATAGAGAAGACTCTTCATACTGGTCATGCTTCATACAAAGTTTCTCTTGCGGT 2273
Query 506 CTGGTTTCCTGGATATATGGGAAGCAGCTACGTTATCTATTAAGAGAGAAGGTTACAGCA 565
||| ||| ||||||||||||||||||| || ||||||||||||||||||||||||||||
Sbjct 2274 -TGGCTTCGTGGATATATGGGAAGCAGCAACATTATCTATTAAGAGAGAAGGTTACAGCA 2332
Query 566 TCAAGTGTAATAATAATCTCACAATTGCAGAAAAGTTCTCAGCTTCTACTGCTATAACAA 625
||||||||| || | |||||||||||||||||||||||||||| |||||| || |||| |
Sbjct 2333 TCAAGTGTATTAGTGATCTCACAATTGCAGAAAAGTTCTCAGCATCTACTACTGTAACCA 2392
Query 626 TTCCGTTTGGGCAACCAGCAGAACTTGTTATCATTGGTTCTGATGGTAGTGAGCATTCCT 685
|||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||
Sbjct 2393 TTCCGTTTGGGCAACCGGCAGAACTTGTTATCATTGGTTCTGATGGTAGTGAACATTCCT 2452
Query 686 TTACAAGCAGATAA 699
| || |||||||||
Sbjct 2453 T-ACGAGCAGATAA 2465
Score = 97.1 bits (52), Expect = 2e-19
Identities = 52/52 (100%), Gaps = 0/52 (0%)
Strand=Plus/Plus
Query 160 GACCTCCAAATTTCAGGAGAACCTTATCCTGGACATGAACTTCAGGCTTGTG 211
||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1927 GACCTCCAAATTTCAGGAGAACCTTATCCTGGACATGAACTTCAGGCTTGTG 1978
> AT5G23510.2 | Symbols: | unknown protein; LOCATED IN: cellular_component
unknown; BEST Arabidopsis thaliana protein match
is: unknown protein (TAIR:AT5G23490.1); Has 30201 Blast hits
to 17322 proteins in 780 species: Archae - 12; Bacteria -
1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses
- 0; Other Eukaryotes - 2996 (source: NCBI BLink). | chr5:7926945-7929338
FORWARD LENGTH=1252
Length=1252
Score = 527 bits (285), Expect = 6e-149
Identities = 429/493 (87%), Gaps = 31/493 (6%)
Strand=Plus/Plus
Query 207 TTGTGATTTTCAGTGGGTATGTCATCTAGAAGATGGATCTGTGAATTACATTGATGGAGC 266
|||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 449 TTGTAATTTTGAGTGGGTATGTCATCTAGAAGATGGATCTGTGAATTACATTGATGGAGC 508
Query 267 AAAGCAGCCAAATTACCTTGTCACTGCTGATGATGTTCATTTATATCTTGCTATTGAGGT 326
|||| |||||||||||||||||||||||||||||||| ||||| |||||||||||| ||
Sbjct 509 AAAGAAGCCAAATTACCTTGTCACTGCTGATGATGTTGGTTTATGTCTTGCTATTGAAGT 568
Query 327 TCAGCCTTTGGATGACAGGAACCGAAAGGGGGAGCTTGTGAAGGTTTTTGCCAATAATAA 386
|||||||||||||||| ||||||| ||||| |||||||||||||||||||||||| ||||
Sbjct 569 TCAGCCTTTGGATGACCGGAACCGGAAGGGAGAGCTTGTGAAGGTTTTTGCCAATGATAA 628
Query 387 TCGCAATTCGCAAGATCGCTTGCCTAATCCTCTTTTTATTTTCGCAGTTCCAGAGATGCA 446
|||||| | | ||||||||| | ||| | | || | ||||| ||
Sbjct 629 TCGCAA---G-A---TCGCTTGCC-A-TCC-------A-----G-AGATGCAGAG---CA 663
Query 447 GAGCAATATAGAGAAGACTCTTCATACTGGTCATGCTTCATACAAAGTTTCTCATGGGAC 506
| |||||| |||||||||||||||||||||||||||||||||||||||| || ||
Sbjct 664 -A----TATAGACAAGACTCTTCATACTGGTCATGCTTCATACAAAGTTTCTCTTGCGAT 718
Query 507 TGGTTTCCTGGATATATGGGAAGCAGCTACGTTATCTATTAAGAGAGAAGGTTACAGCAT 566
||||||| || ||||||||||||||||||||||||||||| ||||||||||||||| |||
Sbjct 719 TGGTTTCGTGCATATATGGGAAGCAGCTACGTTATCTATTGAGAGAGAAGGTTACACCAT 778
Query 567 CAAGTGTAATAATAATCTCACAATTGCAGAAAAGTTCTCAGCTTCTACTGCTATAACAAT 626
|||||||||||| ||||||||||| |||||||||||||||||||||||||| ||| |||
Sbjct 779 CAAGTGTAATAACGATCTCACAATTACAGAAAAGTTCTCAGCTTCTACTGCTGTAAAAAT 838
Query 627 TCCGTTTGGGCAACCAGCAGAACTTGTTATCATTGGTTCTGATGGTAGTGAGCATTCCTT 686
|||||||| | |||| ||||||||||||||||||||||||||||||||||| |||| |||
Sbjct 839 TCCGTTTGAGAAACCTGCAGAACTTGTTATCATTGGTTCTGATGGTAGTGAACATTGCTT 898
Query 687 TACAAGCAGATAA 699
|| || ||||||
Sbjct 899 -ACGAGTAGATAA 910
Score = 95.3 bits (51), Expect = 7e-19
Identities = 51/51 (100%), Gaps = 0/51 (0%)
Strand=Plus/Plus
Query 161 ACCTCCAAATTTCAGGAGAACCTTATCCTGGACATGAACTTCAGGCTTGTG 211
|||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 373 ACCTCCAAATTTCAGGAGAACCTTATCCTGGACATGAACTTCAGGCTTGTG 423
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 33857815078
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5