BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg899831

Length=1455
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT2G24617.1 | Symbols:  | unknown protein; Has 35333 Blast hits...   394    1e-108


> AT2G24617.1 | Symbols:  | unknown protein; Has 35333 Blast hits 
to 34131 proteins in 2444 species: Archae - 798; Bacteria 
- 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses 
- 0; Other Eukaryotes - 9610 (source: NCBI BLink). | chr2:10462910-10463224 
FORWARD LENGTH=315
Length=315

 Score =  394 bits (213),  Expect = 1e-108
 Identities = 268/293 (91%), Gaps = 9/293 (3%)
 Strand=Plus/Minus

Query  1    ATGTGGAAACGA-T--TGGATAGTCTTTTACCACGTGATACATGCGGTTTATACAATAG-  56
            ||||| |||||| |   |||| || ||||||||| |||||||||||||| ||||||| | 
Sbjct  289  ATGTGTAAACGACTAAGGGATCGTGTTTTACCACATGATACATGCGGTTCATACAAT-GT  231

Query  57   ATGTGGAGCTTATGGTCTGTGTGACACAAACACATCACCAAACTGTGTTTGCATCCATGG  116
            ||||||||||||||||||||||||||   ||||||||||||||||||||||||  |||||
Sbjct  230  ATGTGGAGCTTATGGTCTGTGTGACATGGACACATCACCAAACTGTGTTTGCA--CATGG  173

Query  117  GTTTCAGCCGAGAGA-CAAAGAAGCATGGGATTTGCACGACTGGACAGGTGGTTGTACGA  175
            |||| || ||||||| | |||||||||||||||| |||||||||||||||||||||||||
Sbjct  172  GTTTGAGGCGAGAGATC-AAGAAGCATGGGATTTCCACGACTGGACAGGTGGTTGTACGA  114

Query  176  GGAAGACACCGTTGAACTGCTCTAGGGATGGGTTTGAGCAGCTCAGGACAATGAAGTTGC  235
            ||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||
Sbjct  113  GGAAGACACCGTTGAACTGCTCTACAGATGGGTTTGAGCAGCTCAGGACAATGAAGTTGC  54

Query  236  CTGATATTACAAAGTCTATTGTGGACAGGAGTATTGGGTTGAAGGAATGCCAT  288
            | ||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct  53   CAGATATTACAAAGTCTATTGTGGACAGGAGTATTGGGTTGGAGGAATGCCAT  1



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 71736578805


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5