BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg899833
Length=522
Score E
Sequences producing significant alignments: (Bits) Value
AT5G41190.1 | Symbols: | CONTAINS InterPro DOMAIN/s: Nin one b... 180 1e-44
> AT5G41190.1 | Symbols: | CONTAINS InterPro DOMAIN/s: Nin one
binding (NOB1) Zn-ribbon like (InterPro:IPR014881), D-site
20S pre-rRNA nuclease (InterPro:IPR017117); Has 1807 Blast hits
to 1807 proteins in 277 species: Archae - 0; Bacteria -
0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other
Eukaryotes - 339 (source: NCBI BLink). | chr5:16487475-16490101
REVERSE LENGTH=2051
Length=2051
Score = 180 bits (97), Expect = 1e-44
Identities = 146/167 (87%), Gaps = 13/167 (8%)
Strand=Plus/Plus
Query 285 TGAGGCTG-GTGATACCTTTGAGGCATCATCGA-TGGCAGATGATGGTAGCAGCGAGCAG 342
|||||||| | |||||||| ||||||||||||| ||| ||||||||||||||||||||||
Sbjct 1268 TGAGGCTGAG-GATACCTTCGAGGCATCATCGATTGG-AGATGATGGTAGCAGCGAGCAG 1325
Query 343 AGTTGGTC---G-----TT-ATCTGAATCCAATGTAGTTTGTATAACCGGTGACTATGCG 393
|||||||| | || |||||| |||| ||||| ||||||||| |||||||||||
Sbjct 1326 AGTTGGTCATTGAGAGCTTTATCTGAGTCCAGTGTAGCTTGTATAACTGGTGACTATGCA 1385
Query 394 ATGCAAAATGTTATTCTTCAAATGGGTTTGCGTTTGCTTGCACCCGG 440
||||| |||||||||||||||||||||||||| ||||||||||||||
Sbjct 1386 ATGCAGAATGTTATTCTTCAAATGGGTTTGCGATTGCTTGCACCCGG 1432
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 24966371059
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5