BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg899837
Length=627
Score E
Sequences producing significant alignments: (Bits) Value
AT2G24670.1 | Symbols: | Domain of unknown function (DUF313) ... 726 0.0
AT2G24680.2 | Symbols: | transcriptional factor B3 family prot... 377 6e-104
> AT2G24670.1 | Symbols: | Domain of unknown function (DUF313)
| chr2:10492669-10493567 FORWARD LENGTH=899
Length=899
Score = 726 bits (393), Expect = 0.0
Identities = 519/579 (90%), Gaps = 12/579 (2%)
Strand=Plus/Plus
Query 38 CCCATATTCACGACCGCGCATTAAGAGAATCTCCATCCAA-ACGCACTAGAAACAGACGT 96
||||||||||||||| | ||||||||||||||||| ||| ||||| ||||||||||| |
Sbjct 316 CCCATATTCACGACCACTCATTAAGAGAATCTCCA-ACAAGACGCAGTAGAAACAGACAT 374
Query 97 GATGTCCCTCCTATGTCTCCTCCCATGAAACAACCAAAATCTAAGAAGGCAAAACGCAGT 156
||| ||||||||||||||||||||||| |||||| |||||||||||||||||||||||||
Sbjct 375 GATCTCCCTCCTATGTCTCCTCCCATGGAACAACGAAAATCTAAGAAGGCAAAACGCAGT 434
Query 157 TCGGAAGCTTCTTCTTCCAAGACAAGAGAACCGACGCTAGGGTGGCTTATCAGGTTGATG 216
|||| ||||||||||||||||||||||| ||||||| ||||||||||||||| ||||||
Sbjct 435 ACGGATGCTTCTTCTTCCAAGACAAGAGAGCCGACGCCAGGGTGGCTTATCAGCTTGATG 494
Query 217 AGAAGAAAGAACGGTAGAGAGC-ACGAAGACAATTCGAAGAAGATCATAGATAAAGAATT 275
||||| ||||||||| |||| | |||||||||||||||||||||||||||||||||||
Sbjct 495 AGAAGCAAGAACGGTGGAGA-CGTTGAAGACAATTCGAAGAAGATCATAGATAAAGAATT 553
Query 276 A-ACCGCAACCGATGTCCATCCA-AACAACAATCGTCTCTCAATACCTCTCAGCAACATT 333
| || |||||||||| ||||| | ||| | |||||||||||||||| ||||| | ||
Sbjct 554 ATTCC-AAACCGATGTCGATCCACACCAA-AGTCGTCTCTCAATACCTGTCAGCCAGATC 611
Query 334 GTGGAATTGGAATTCTTGAACCACGAGGAAAAAAGGGCCATAGAAGAAGATGCCAATAAG 393
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 612 GTGGAGTTGGAATTCTTGAACCACGAGGAAAAAAGGGCCATAGAAGAAGATGCCAATAGG 671
Query 394 GTTAACAAAGAAGGAGTAGACGCGATACTCGTG-ACTTCTGATCTAAGAGAATTTCAGGT 452
||| |||||||||||||||||||||||||||| | |||| ||||||| ||||||| |||
Sbjct 672 GTTCGCAAAGAAGGAGTAGACGCGATACTCGTGGA-TTCTCATCTAAGGGAATTTCCGGT 730
Query 453 GAATTTGAGGTTGTGGGACATGAGAGGCAGTCTTCAATACAATTTGGTTACAGGGTGGAA 512
||||||||||||| |||||||||| |||| ||||| ||||||||||||| ||||||||||
Sbjct 731 GAATTTGAGGTTGAGGGACATGAGGGGCATTCTTCTATACAATTTGGTTGCAGGGTGGAA 790
Query 513 TCAAGTGGTTGA-AGATTGCCGTCTAAAGAAAAATAGAAATAATCGCCTCTGGTCTTTCC 571
|||||||||| | |||||||| |||| || |||| | ||||| |||||| ||||||||||
Sbjct 791 TCAAGTGGTT-ACAGATTGCCTTCTAGAGGAAAACACAAATATTCGCCTATGGTCTTTCC 849
Query 572 ACTCCAATGATAAACTCTATTTCGCTCTCGTTCCTCTCT 610
|| || |||||| ||||||||||||||||||||||||||
Sbjct 850 ACGCCGATGATACACTCTATTTCGCTCTCGTTCCTCTCT 888
> AT2G24680.2 | Symbols: | transcriptional factor B3 family protein
| chr2:10493263-10496878 REVERSE LENGTH=1765
Length=1765
Score = 377 bits (204), Expect = 6e-104
Identities = 266/296 (90%), Gaps = 4/296 (1%)
Strand=Plus/Minus
Query 317 TACCTCTCAGCAACATTGTGGAATTGGAATTCTTGAACCACGAGGAAAAAAGGGCCATAG 376
||||| ||||| | || ||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1765 TACCTGTCAGCCAGATCGTGGAGTTGGAATTCTTGAACCACGAGGAAAAAAGGGCCATAG 1706
Query 377 AAGAAGATGCCAATAAGGTTAACAAAGAAGGAGTAGACGCGATACTCGTG-ACTTCTGAT 435
||||||||||||||| |||| |||||||||||||||||||||||||||| | |||| ||
Sbjct 1705 AAGAAGATGCCAATAGGGTTCGCAAAGAAGGAGTAGACGCGATACTCGTGGA-TTCTCAT 1647
Query 436 CTAAGAGAATTTCAGGTGAATTTGAGGTTGTGGGACATGAGAGGCAGTCTTCAATACAAT 495
||||| ||||||| |||||||||||||||| |||||||||| |||| ||||| |||||||
Sbjct 1646 CTAAGGGAATTTCCGGTGAATTTGAGGTTGAGGGACATGAGGGGCATTCTTCTATACAAT 1587
Query 496 TTGGTTACAGGGTGGAATCAAGTGGTTGA-AGATTGCCGTCTAAAGAAAAATAGAAATAA 554
|||||| |||||||||||||||||||| | |||||||| |||| || |||| | |||||
Sbjct 1586 TTGGTTGCAGGGTGGAATCAAGTGGTT-ACAGATTGCCTTCTAGAGGAAAACACAAATAT 1528
Query 555 TCGCCTCTGGTCTTTCCACTCCAATGATAAACTCTATTTCGCTCTCGTTCCTCTCT 610
|||||| |||||||||||| || |||||| ||||||||||||||||||||||||||
Sbjct 1527 TCGCCTATGGTCTTTCCACGCCGATGATACACTCTATTTCGCTCTCGTTCCTCTCT 1472
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 30240956494
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5