BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg899838 Length=2334 Score E Sequences producing significant alignments: (Bits) Value AT2G24680.2 | Symbols: | transcriptional factor B3 family prot... 935 0.0 AT4G01593.1 | Symbols: | other RNA | chr4:690710-692169 FORWAR... 130 7e-29 > AT2G24680.2 | Symbols: | transcriptional factor B3 family protein | chr2:10493263-10496878 REVERSE LENGTH=1765 Length=1765 Score = 935 bits (506), Expect = 0.0 Identities = 685/771 (89%), Gaps = 14/771 (2%) Strand=Plus/Plus Query 1570 AGAGATTC-ATTTCCAGCAAGCCAAAACCAGTTTGTGACATTATCACTTTCACATGACAG 1628 |||||||| | || || |||||||||||| |||| |||||||| ||||| | ||||||| Sbjct 692 AGAGATTCAACTT-CACCAAGCCAAAACCGGTTTATGACATTAACACTTACTCATGACAA 750 Query 1629 CCTCAGAAAAGGTAGACAGTATCTTCCATTGTCATTCACAAGAGAAAATGGCTTGGACGA 1688 ||||| |||| |||||| ||||||||| ||||||||||||||||| |||||||||||| | Sbjct 751 CCTCATAAAAAGTAGACGGTATCTTCCGTTGTCATTCACAAGAGATAATGGCTTGGACAA 810 Query 1689 ACCTGGGATAATAACTCTGGTT-AGCAAAGA-TGGTACAAAGTTGGAGGCAAGTCTTCTA 1746 ||||||||| || ||| ||| ||||| | ||||| ||||| |||||||| ||||||| Sbjct 811 ACCTGGGATGATTTTTCT-GTTGGGCAAA-ACTGGTAGAAAGTGGGAGGCAAATCTTCTA 868 Query 1747 CGGGAAAACAAAGGAATAA-TG-TGTCTC-GGAAAGGGCTGGAAAGAGTTCGCCATAGAA 1803 ||||| | ||||| || || | | | |||||||||||||||||||||||||| | | Sbjct 869 AGGGAAGCCTCAGGAAGAATTGTTTTGACGGGAAAGGGCTGGAAAGAGTTCGCCATGGCA 928 Query 1804 AACGGCTTAAAAACCGGCGAATTGTTCACGTTGGAGGCAATTTTGGAGAAGGGAACTCCT 1863 ||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||| Sbjct 929 AACGGCTTAAAAAGCGGTGAATTGTTCACGTTGGAGGCAATTTTGGAGAAGGGAACTCCT 988 Query 1864 ATGCTCAGTTTGCTCAGTACAGAGTCCACAAGTGATAGAAGCCAGCAAGGAGAGTGTTCC 1923 |||||||||||| ||| |||| ||||||||| | |||||||||| |||||||| ||||| Sbjct 989 ATGCTCAGTTTGGTCAATACACAGTCCACAAATTATAGAAGCCAACAAGGAGAATGTTC- 1047 Query 1924 AA-AGATAGCGAGAAAGAGTCG---ATTTCTGCAGAACCTAGCAAAGAAAACAAGAAGAA 1979 || |||||||||||| |||||| |||| ||| |||||||| | || |||||||||| Sbjct 1048 AAGAGATAGCGAGAAGGAGTCGTCGATTTGTGCTGAACCTAGTAGAGGAAACAAGAAGTG 1107 Query 1980 GAAAGCCACTAGCAACAGAGAGGAGAGGAGAGACTCTTCTTCAGCAATCCAAAAGCGATA 2039 |||||| |||| ||||||| |||||||||||||||| || |||||||||||||| ||||| Sbjct 1108 GAAAGCTACTAACAACAGAAAGGAGAGGAGAGACTCGTCGTCAGCAATCCAAAATCGATA 1167 Query 2040 TGTGACATTAACACTCACACCAGAAGATGTCAGCGCCTGTAAACTAATTCTTCCAAGTCA 2099 ||||||||||||||||||||||||||||||||| ||||||| |||||||||||| ||||| Sbjct 1168 TGTGACATTAACACTCACACCAGAAGATGTCAGAGCCTGTACACTAATTCTTCCGAGTCA 1227 Query 2100 ATTCATGAAAGCTAATGGCATTAACAAGCTCGGGAAGATAACTTTGGTGGGTCAAAACAG 2159 ||||||||||||||||||||| |||||||| ||||||| ||||||| ||||||||||||| Sbjct 1228 ATTCATGAAAGCTAATGGCATCAACAAGCTTGGGAAGAAAACTTTGTTGGGTCAAAACAG 1287 Query 2160 AACGAAGTGGTTTGCATATCTACTGTCAAAAAATGGAATTGTGGCTCTGGGATCTGGTTG 2219 || ||||||||||||||||||||||||||||| |||| ||||||| |||||||||||||| Sbjct 1288 AAAGAAGTGGTTTGCATATCTACTGTCAAAAAGTGGATTTGTGGCACTGGGATCTGGTTG 1347 Query 2220 GAAGGGTTTCTGTGAAGCTAATGGCGTTAAGACAGGGGAGTCATTCACTTTGGAATATAT 2279 ||| |||||||||||||||||||||||||||||||| || ||||||| |||||||||||| Sbjct 1348 GAAAGGTTTCTGTGAAGCTAATGGCGTTAAGACAGGAGAATCATTCAATTTGGAATATAT 1407 Query 2280 TGATGAACAAGACACAACTCCTGTGTTTAAGTTCTGGTCCAACTCCGTAGA 2330 |||||||||||||||||||||||||||||||||||| |||||||||||||| Sbjct 1408 TGATGAACAAGACACAACTCCTGTGTTTAAGTTCTGTTCCAACTCCGTAGA 1458 Score = 697 bits (377), Expect = 0.0 Identities = 692/836 (83%), Gaps = 54/836 (6%) Strand=Plus/Plus Query 823 TATCTTCCACAAGATTTAAC-AGCTTTAATTGGTCTTGAAAGGAAATGCCGTGAGATTGT 881 |||||||||||||||||||| || || | |||||||||||||||||| |||||||||||| Sbjct 359 TATCTTCCACAAGATTTAACAAG-TTCAGTTGGTCTTGAAAGGAAATACCGTGAGATTGT 417 Query 882 TGTAACAGATGAAAGGG--A-AAGATCATGGGCATTGGAGCTGAAGTTCAACAAATCATC 938 ||||||||||||||||| | |||||||||||| ||||| |||| ||||||||||||||| Sbjct 418 TGTAACAGATGAAAGGGAAAGAAGATCATGGGCGTTGGATCTGAGGTTCAACAAATCATC 477 Query 939 TGATACTTTCTACATAAGCCGAGGTTGGAGAAGTTTCTGTGATGAAAACGATAAGAAAG- 997 |||||||||||||||||||||||||||||| ||||||||||||||||||| ||| |||| Sbjct 478 TGATACTTTCTACATAAGCCGAGGTTGGAGGAGTTTCTGTGATGAAAACGGTAA-AAAGC 536 Query 998 CTGGCGGCGTCTTTGTTTTCAGATTAGTTGGAAACAGGGAAACTCCAGTGCTCAGTTTCT 1057 | || || ||||||||||||| | |||||||||||||||||||||| ||||| ||||||| Sbjct 537 CAGGAGGTGTCTTTGTTTTCAAACTAGTTGGAAACAGGGAAACTCCGGTGCTTAGTTTCT 596 Query 1058 GTTCCACTGAATCTATC-A--A--G-A-AC-A--ACA-AAG------AAA-AC---TGTA 1096 ||||||||||||||||| | | | | || | ||| ||| ||| || |||| Sbjct 597 GTTCCACTGAATCTATCAACGATGGAACACAAGGACATAAGAACAACAAATACAATTGTA 656 Query 1097 TGGAGCTGGAGAGAAAGAAGAAGCATCTGAAATGTATAGATTCAACTTCACCAAGCCAAA 1156 |||||||| |||| |||||||||| | ||| ||||| ||||||||||||||||||||||| Sbjct 657 TGGAGCTGAAGAGCAAGAAGAAGCGTATGAGATGTAGAGATTCAACTTCACCAAGCCAAA 716 Query 1157 ACCGGTTTGTAACATTATCACTTTCACATGACAACCTCAGAACAGGTACACGGCATCTTC 1216 |||||||| | |||||| ||||| | ||||||||||||| || | ||| |||| |||||| Sbjct 717 ACCGGTTTATGACATTAACACTTACTCATGACAACCTCATAAAAAGTAGACGGTATCTTC 776 Query 1217 CACTGTCATTTGCAAGAGATAATGGCTTGGACAAACCTGGGATAATAACTCTGGTTGA-C 1275 | ||||||| ||||||||||||||||||||||||||||||| || |||| ||| | Sbjct 777 CGTTGTCATTCACAAGAGATAATGGCTTGGACAAACCTGGGATGATTTTTCTG-TTGGGC 835 Query 1276 AAAGA-TGGTACAAAAAGGAAGGCAAATCTTCGACGGGAAAAAACAGGAAAGA-T-GTTT 1332 ||| | ||||| ||| || |||||||||||| | ||||| |||||| || | |||| Sbjct 836 AAA-ACTGGTAGAAAGTGGGAGGCAAATCTTCTAAGGGAAGCCTCAGGAA-GAATTGTTT 893 Query 1333 CT--CGG-AAAGGGATGGAAAGATTTCGTTATAGCAAACGGCTTAAAGAA-CAGCAAATC 1388 | ||| |||||| |||||||| |||| || |||||||||||||| || | | ||| Sbjct 894 -TGACGGGAAAGGGCTGGAAAGAGTTCGCCATGGCAAACGGCTTAAA-AAGCGGTGAAT- 950 Query 1389 T-TTCACTTTGGAGGCAGTTTTGGAGAACGGAACTCATATGCTCAGTTTGGTCAGTATAC 1447 | ||||| ||||||||| |||||||||| ||||||| ||||||||||||||||| || || Sbjct 951 TGTTCACGTTGGAGGCAATTTTGGAGAAGGGAACTCCTATGCTCAGTTTGGTCAATACAC 1010 Query 1448 AGTCCACAAGTGATAGAAGCCAGCAAGGAGAGTGCTCAAAAGATAGCAAGAAAGAGT--T 1505 ||||||||| | |||||||||| |||||||| || |||| ||||||| |||| |||| | Sbjct 1011 AGTCCACAAATTATAGAAGCCAACAAGGAGAATGTTCAAGAGATAGCGAGAAGGAGTCGT 1070 Query 1506 A-ATTTCTGCAGTACCTAGCAGAGGAAACAA-AACCAGGAAAGCCA-TGAACAACAGAGA 1562 |||| ||| | |||||| ||||||||||| || ||||||| | | ||||||||| | Sbjct 1071 CGATTTGTGCTGAACCTAGTAGAGGAAACAAGAAGT-GGAAAGCTACT-AACAACAGAAA 1128 Query 1563 CGTGAGGAGAGATTCATT-TCCAGCAAGCCAAAACCAGTT-TGTGACATTATCACT 1616 | ||||||||| || | || ||||| |||||| | | | |||||||||| |||| Sbjct 1129 GGAGAGGAGAGACTCGTCGTC-AGCAATCCAAAATC-GATATGTGACATTAACACT 1182 > AT4G01593.1 | Symbols: | other RNA | chr4:690710-692169 FORWARD LENGTH=1275 Length=1275 Score = 130 bits (70), Expect = 7e-29 Identities = 97/109 (89%), Gaps = 5/109 (5%) Strand=Plus/Plus Query 823 TATCTTCCACAAGATTTAAC-AGCTTTAATTGGTCTTGAAAGGAAATGCCGTGAGATTGT 881 |||||| |||||||| |||| || || | ||||||||||||||||||||||||||||||| Sbjct 438 TATCTTTCACAAGATCTAACAAG-TTCAGTTGGTCTTGAAAGGAAATGCCGTGAGATTGT 496 Query 882 TGTAACAGATGAAAGGGA-A-A-GATCATGGGCATTGGAGCTGAAGTTC 927 |||||||||||||||||| | | |||| ||||||||||| |||| |||| Sbjct 497 TGTAACAGATGAAAGGGAGAGAAGATCGTGGGCATTGGATCTGAGGTTC 545 Score = 56.5 bits (30), Expect = 1e-06 Identities = 30/30 (100%), Gaps = 0/30 (0%) Strand=Plus/Plus Query 1074 CAAGAACAACAAAGAAAACTGTATGGAGCT 1103 |||||||||||||||||||||||||||||| Sbjct 1013 CAAGAACAACAAAGAAAACTGTATGGAGCT 1042 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 115862857860 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5