BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg899838
Length=2334
Score E
Sequences producing significant alignments: (Bits) Value
AT2G24680.2 | Symbols: | transcriptional factor B3 family prot... 935 0.0
AT4G01593.1 | Symbols: | other RNA | chr4:690710-692169 FORWAR... 130 7e-29
> AT2G24680.2 | Symbols: | transcriptional factor B3 family protein
| chr2:10493263-10496878 REVERSE LENGTH=1765
Length=1765
Score = 935 bits (506), Expect = 0.0
Identities = 685/771 (89%), Gaps = 14/771 (2%)
Strand=Plus/Plus
Query 1570 AGAGATTC-ATTTCCAGCAAGCCAAAACCAGTTTGTGACATTATCACTTTCACATGACAG 1628
|||||||| | || || |||||||||||| |||| |||||||| ||||| | |||||||
Sbjct 692 AGAGATTCAACTT-CACCAAGCCAAAACCGGTTTATGACATTAACACTTACTCATGACAA 750
Query 1629 CCTCAGAAAAGGTAGACAGTATCTTCCATTGTCATTCACAAGAGAAAATGGCTTGGACGA 1688
||||| |||| |||||| ||||||||| ||||||||||||||||| |||||||||||| |
Sbjct 751 CCTCATAAAAAGTAGACGGTATCTTCCGTTGTCATTCACAAGAGATAATGGCTTGGACAA 810
Query 1689 ACCTGGGATAATAACTCTGGTT-AGCAAAGA-TGGTACAAAGTTGGAGGCAAGTCTTCTA 1746
||||||||| || ||| ||| ||||| | ||||| ||||| |||||||| |||||||
Sbjct 811 ACCTGGGATGATTTTTCT-GTTGGGCAAA-ACTGGTAGAAAGTGGGAGGCAAATCTTCTA 868
Query 1747 CGGGAAAACAAAGGAATAA-TG-TGTCTC-GGAAAGGGCTGGAAAGAGTTCGCCATAGAA 1803
||||| | ||||| || || | | | |||||||||||||||||||||||||| | |
Sbjct 869 AGGGAAGCCTCAGGAAGAATTGTTTTGACGGGAAAGGGCTGGAAAGAGTTCGCCATGGCA 928
Query 1804 AACGGCTTAAAAACCGGCGAATTGTTCACGTTGGAGGCAATTTTGGAGAAGGGAACTCCT 1863
||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 929 AACGGCTTAAAAAGCGGTGAATTGTTCACGTTGGAGGCAATTTTGGAGAAGGGAACTCCT 988
Query 1864 ATGCTCAGTTTGCTCAGTACAGAGTCCACAAGTGATAGAAGCCAGCAAGGAGAGTGTTCC 1923
|||||||||||| ||| |||| ||||||||| | |||||||||| |||||||| |||||
Sbjct 989 ATGCTCAGTTTGGTCAATACACAGTCCACAAATTATAGAAGCCAACAAGGAGAATGTTC- 1047
Query 1924 AA-AGATAGCGAGAAAGAGTCG---ATTTCTGCAGAACCTAGCAAAGAAAACAAGAAGAA 1979
|| |||||||||||| |||||| |||| ||| |||||||| | || ||||||||||
Sbjct 1048 AAGAGATAGCGAGAAGGAGTCGTCGATTTGTGCTGAACCTAGTAGAGGAAACAAGAAGTG 1107
Query 1980 GAAAGCCACTAGCAACAGAGAGGAGAGGAGAGACTCTTCTTCAGCAATCCAAAAGCGATA 2039
|||||| |||| ||||||| |||||||||||||||| || |||||||||||||| |||||
Sbjct 1108 GAAAGCTACTAACAACAGAAAGGAGAGGAGAGACTCGTCGTCAGCAATCCAAAATCGATA 1167
Query 2040 TGTGACATTAACACTCACACCAGAAGATGTCAGCGCCTGTAAACTAATTCTTCCAAGTCA 2099
||||||||||||||||||||||||||||||||| ||||||| |||||||||||| |||||
Sbjct 1168 TGTGACATTAACACTCACACCAGAAGATGTCAGAGCCTGTACACTAATTCTTCCGAGTCA 1227
Query 2100 ATTCATGAAAGCTAATGGCATTAACAAGCTCGGGAAGATAACTTTGGTGGGTCAAAACAG 2159
||||||||||||||||||||| |||||||| ||||||| ||||||| |||||||||||||
Sbjct 1228 ATTCATGAAAGCTAATGGCATCAACAAGCTTGGGAAGAAAACTTTGTTGGGTCAAAACAG 1287
Query 2160 AACGAAGTGGTTTGCATATCTACTGTCAAAAAATGGAATTGTGGCTCTGGGATCTGGTTG 2219
|| ||||||||||||||||||||||||||||| |||| ||||||| ||||||||||||||
Sbjct 1288 AAAGAAGTGGTTTGCATATCTACTGTCAAAAAGTGGATTTGTGGCACTGGGATCTGGTTG 1347
Query 2220 GAAGGGTTTCTGTGAAGCTAATGGCGTTAAGACAGGGGAGTCATTCACTTTGGAATATAT 2279
||| |||||||||||||||||||||||||||||||| || ||||||| ||||||||||||
Sbjct 1348 GAAAGGTTTCTGTGAAGCTAATGGCGTTAAGACAGGAGAATCATTCAATTTGGAATATAT 1407
Query 2280 TGATGAACAAGACACAACTCCTGTGTTTAAGTTCTGGTCCAACTCCGTAGA 2330
|||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1408 TGATGAACAAGACACAACTCCTGTGTTTAAGTTCTGTTCCAACTCCGTAGA 1458
Score = 697 bits (377), Expect = 0.0
Identities = 692/836 (83%), Gaps = 54/836 (6%)
Strand=Plus/Plus
Query 823 TATCTTCCACAAGATTTAAC-AGCTTTAATTGGTCTTGAAAGGAAATGCCGTGAGATTGT 881
|||||||||||||||||||| || || | |||||||||||||||||| ||||||||||||
Sbjct 359 TATCTTCCACAAGATTTAACAAG-TTCAGTTGGTCTTGAAAGGAAATACCGTGAGATTGT 417
Query 882 TGTAACAGATGAAAGGG--A-AAGATCATGGGCATTGGAGCTGAAGTTCAACAAATCATC 938
||||||||||||||||| | |||||||||||| ||||| |||| |||||||||||||||
Sbjct 418 TGTAACAGATGAAAGGGAAAGAAGATCATGGGCGTTGGATCTGAGGTTCAACAAATCATC 477
Query 939 TGATACTTTCTACATAAGCCGAGGTTGGAGAAGTTTCTGTGATGAAAACGATAAGAAAG- 997
|||||||||||||||||||||||||||||| ||||||||||||||||||| ||| ||||
Sbjct 478 TGATACTTTCTACATAAGCCGAGGTTGGAGGAGTTTCTGTGATGAAAACGGTAA-AAAGC 536
Query 998 CTGGCGGCGTCTTTGTTTTCAGATTAGTTGGAAACAGGGAAACTCCAGTGCTCAGTTTCT 1057
| || || ||||||||||||| | |||||||||||||||||||||| ||||| |||||||
Sbjct 537 CAGGAGGTGTCTTTGTTTTCAAACTAGTTGGAAACAGGGAAACTCCGGTGCTTAGTTTCT 596
Query 1058 GTTCCACTGAATCTATC-A--A--G-A-AC-A--ACA-AAG------AAA-AC---TGTA 1096
||||||||||||||||| | | | | || | ||| ||| ||| || ||||
Sbjct 597 GTTCCACTGAATCTATCAACGATGGAACACAAGGACATAAGAACAACAAATACAATTGTA 656
Query 1097 TGGAGCTGGAGAGAAAGAAGAAGCATCTGAAATGTATAGATTCAACTTCACCAAGCCAAA 1156
|||||||| |||| |||||||||| | ||| ||||| |||||||||||||||||||||||
Sbjct 657 TGGAGCTGAAGAGCAAGAAGAAGCGTATGAGATGTAGAGATTCAACTTCACCAAGCCAAA 716
Query 1157 ACCGGTTTGTAACATTATCACTTTCACATGACAACCTCAGAACAGGTACACGGCATCTTC 1216
|||||||| | |||||| ||||| | ||||||||||||| || | ||| |||| ||||||
Sbjct 717 ACCGGTTTATGACATTAACACTTACTCATGACAACCTCATAAAAAGTAGACGGTATCTTC 776
Query 1217 CACTGTCATTTGCAAGAGATAATGGCTTGGACAAACCTGGGATAATAACTCTGGTTGA-C 1275
| ||||||| ||||||||||||||||||||||||||||||| || |||| ||| |
Sbjct 777 CGTTGTCATTCACAAGAGATAATGGCTTGGACAAACCTGGGATGATTTTTCTG-TTGGGC 835
Query 1276 AAAGA-TGGTACAAAAAGGAAGGCAAATCTTCGACGGGAAAAAACAGGAAAGA-T-GTTT 1332
||| | ||||| ||| || |||||||||||| | ||||| |||||| || | ||||
Sbjct 836 AAA-ACTGGTAGAAAGTGGGAGGCAAATCTTCTAAGGGAAGCCTCAGGAA-GAATTGTTT 893
Query 1333 CT--CGG-AAAGGGATGGAAAGATTTCGTTATAGCAAACGGCTTAAAGAA-CAGCAAATC 1388
| ||| |||||| |||||||| |||| || |||||||||||||| || | | |||
Sbjct 894 -TGACGGGAAAGGGCTGGAAAGAGTTCGCCATGGCAAACGGCTTAAA-AAGCGGTGAAT- 950
Query 1389 T-TTCACTTTGGAGGCAGTTTTGGAGAACGGAACTCATATGCTCAGTTTGGTCAGTATAC 1447
| ||||| ||||||||| |||||||||| ||||||| ||||||||||||||||| || ||
Sbjct 951 TGTTCACGTTGGAGGCAATTTTGGAGAAGGGAACTCCTATGCTCAGTTTGGTCAATACAC 1010
Query 1448 AGTCCACAAGTGATAGAAGCCAGCAAGGAGAGTGCTCAAAAGATAGCAAGAAAGAGT--T 1505
||||||||| | |||||||||| |||||||| || |||| ||||||| |||| |||| |
Sbjct 1011 AGTCCACAAATTATAGAAGCCAACAAGGAGAATGTTCAAGAGATAGCGAGAAGGAGTCGT 1070
Query 1506 A-ATTTCTGCAGTACCTAGCAGAGGAAACAA-AACCAGGAAAGCCA-TGAACAACAGAGA 1562
|||| ||| | |||||| ||||||||||| || ||||||| | | ||||||||| |
Sbjct 1071 CGATTTGTGCTGAACCTAGTAGAGGAAACAAGAAGT-GGAAAGCTACT-AACAACAGAAA 1128
Query 1563 CGTGAGGAGAGATTCATT-TCCAGCAAGCCAAAACCAGTT-TGTGACATTATCACT 1616
| ||||||||| || | || ||||| |||||| | | | |||||||||| ||||
Sbjct 1129 GGAGAGGAGAGACTCGTCGTC-AGCAATCCAAAATC-GATATGTGACATTAACACT 1182
> AT4G01593.1 | Symbols: | other RNA | chr4:690710-692169 FORWARD
LENGTH=1275
Length=1275
Score = 130 bits (70), Expect = 7e-29
Identities = 97/109 (89%), Gaps = 5/109 (5%)
Strand=Plus/Plus
Query 823 TATCTTCCACAAGATTTAAC-AGCTTTAATTGGTCTTGAAAGGAAATGCCGTGAGATTGT 881
|||||| |||||||| |||| || || | |||||||||||||||||||||||||||||||
Sbjct 438 TATCTTTCACAAGATCTAACAAG-TTCAGTTGGTCTTGAAAGGAAATGCCGTGAGATTGT 496
Query 882 TGTAACAGATGAAAGGGA-A-A-GATCATGGGCATTGGAGCTGAAGTTC 927
|||||||||||||||||| | | |||| ||||||||||| |||| ||||
Sbjct 497 TGTAACAGATGAAAGGGAGAGAAGATCGTGGGCATTGGATCTGAGGTTC 545
Score = 56.5 bits (30), Expect = 1e-06
Identities = 30/30 (100%), Gaps = 0/30 (0%)
Strand=Plus/Plus
Query 1074 CAAGAACAACAAAGAAAACTGTATGGAGCT 1103
||||||||||||||||||||||||||||||
Sbjct 1013 CAAGAACAACAAAGAAAACTGTATGGAGCT 1042
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 115862857860
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5