BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg899847
Length=2760
Score E
Sequences producing significant alignments: (Bits) Value
AT2G24720.1 | Symbols: ATGLR2.2, GLR2.2 | glutamate receptor 2.... 1267 0.0
AT2G24710.1 | Symbols: ATGLR2.3, GLR2.3 | glutamate receptor 2.... 1134 0.0
AT2G24750.1 | Symbols: | pseudogene, similar to Avr9/Cf-9 rapi... 1000 0.0
> AT2G24720.1 | Symbols: ATGLR2.2, GLR2.2 | glutamate receptor
2.2 | chr2:10522783-10525840 REVERSE LENGTH=2763
Length=2763
Score = 1267 bits (686), Expect = 0.0
Identities = 1015/1173 (87%), Gaps = 26/1173 (2%)
Strand=Plus/Plus
Query 13 AAAG-TTttcttcttcatcttgctcttcttcttctcctccttcAAG-GTGG-AAGTCAGT 69
|||| |||||||| | ||||| |||| ||||||| | |||| | ||| ||| |||
Sbjct 12 AAAGCTTTTCTTCCGCTTCTTGTTCTTGTTCTTCT--T-CTTC-TGTTTGGAAAG-CAGC 66
Query 70 AGAGGACAGAACAACGG-AAGAACCAAAGTCAATGTCGGTGTTGTAACAGATGTTGGAAC 128
||||||||| ||||||| || |||| ||||||| ||||||||||| ||||||| || ||
Sbjct 67 AGAGGACAGGACAACGGCAA-AACCCAAGTCAACATCGGTGTTGTATCAGATGTCGGTAC 125
Query 129 TTCATACTCGGACGTTGCCATGCTCTGCATCAACATGTCTCTAGCCGATTTCTACTCTTC 188
||||||| |||| |||||||||||||||||||| |||||||| |||||||||||||||||
Sbjct 126 TTCATACCCGGATGTTGCCATGCTCTGCATCAATATGTCTCTTGCCGATTTCTACTCTTC 185
Query 189 TCGTCCCCAATTCCAGACAAGGCTTGTCGTCAACGTTGGCGACTCCAAAGAA-GACGTCG 247
||||||||| || |||||||||||||||||||||||||| ||||||||| || ||||| |
Sbjct 186 TCGTCCCCAGTTTCAGACAAGGCTTGTCGTCAACGTTGGTGACTCCAAA-AATGACGTTG 244
Query 248 TCGGTGCCGCATCTGCAGCTATTGAGCTGATAAAGAACAAGAAAGTGAAAGCGATTTTGG 307
| ||||||||| ||||||||||||| ||||||||||||||| |||||||||| |||||||
Sbjct 245 TAGGTGCCGCAACTGCAGCTATTGATCTGATAAAGAACAAGCAAGTGAAAGCTATTTTGG 304
Query 308 GGCCATGGACTTCAATGCAAGCTCATTTTTTGGTTGAGATTGGCCAAAAGTCACGAGTTC 367
|||||||||| || |||||||||||||| ||| | |||||||||||||| || || ||||
Sbjct 305 GGCCATGGACATCTATGCAAGCTCATTTCTTGATCGAGATTGGCCAAAAATCTCGGGTTC 364
Query 368 C-GATTATTTCCTACTCTGCAACAAGCCCGTTTCTTACATCTCTCCGTAGTCCATACTTC 426
| | || ||||||| |||||||||||||| | |||||| |||||||| |||||||||||
Sbjct 365 CTG-TTGTTTCCTATTCTGCAACAAGCCCATCTCTTACTTCTCTCCGCAGTCCATACTT- 422
Query 427 CTT-CGTGCTACATACGAGGACTCCTCTCAAGTAAACGCCGTAAAAGCTATTATCAAGTT 485
||| || |||||||| ||||||||||||||||| | || |||||||||||||||||||
Sbjct 423 CTTCCGAGCTACATATGAGGACTCCTCTCAAGTGCATGCTATAAAAGCTATTATCAAGTT 482
Query 486 GTTTGGCTGGCGAGAAGCTGTACCTGTTTACGTAGACAACACGTTTGGAGAAGGTATAAT 545
|||||| ||| |||||| ||| || |||||| | |||||||| |||||||||||||||||
Sbjct 483 GTTTGGGTGGAGAGAAGTTGTGCCAGTTTACATCGACAACACTTTTGGAGAAGGTATAAT 542
Query 546 GCCTCGTCTCACAGATGCATTACAAGAAATTAATGTTCGAATACCTTATAGATCTGTTAT 605
|||||||||||| ||| |||||||||| ||||||||||| |||||||||||||| |||||
Sbjct 543 GCCTCGTCTCACTGATTCATTACAAGATATTAATGTTCGGATACCTTATAGATCCGTTAT 602
Query 606 CGCTCTCAATGCCACGGATCAAGATATCTCCGTGGAGCTTCTCAAAATGATGACCATGCC 665
| |||||||||||||||||||||||||||| ||||||||||| || ||||||| ||||||
Sbjct 603 CCCTCTCAATGCCACGGATCAAGATATCTCTGTGGAGCTTCTTAAGATGATGAACATGCC 662
Query 666 CACTAGAGTCTTCATTGTCCACATGTACTCTTCTCTTGCCTCAAGAGTCTTTATAAAAGC 725
||| ||||| |||||||||||||||| ||||||||| ||||||| |||||| || |||||
Sbjct 663 CACAAGAGTGTTCATTGTCCACATGTCCTCTTCTCTAGCCTCAACAGTCTTCATTAAAGC 722
Query 726 TAAGGAGATTGGTTTGATGAAACCAGGATATGTATGGATCCTTACCAATAGTGTAACCGA 785
|||||| ||||||||||||||||||||||||| ||||||||||| ||| | || | ||
Sbjct 723 AAAGGAGCTTGGTTTGATGAAACCAGGATATGTCTGGATCCTTACAAATGGAGTTATGGA 782
Query 786 TGACTTA-GCTACGATGAATGAGACGGATGTTGAGGCTATGGAGGGCGTACTTGG-TGTT 843
|| |||| | | |||| |||||||||| | |||||||||||||||| ||| |||| | ||
Sbjct 783 TGGCTTACGGT-CGATAAATGAGACGGGTATTGAGGCTATGGAGGGGGTA-TTGGGTATT 840
Query 844 AAAACTTATATTC-AGAAATCCATAGAGCTGGACAAC-TTTAGATCACGATGGAGGAAGA 901
||||||||||||| | ||||||| ||| || || ||| ||||||||||| |||| || ||
Sbjct 841 AAAACTTATATTCCA-AAATCCAAAGATCTAGA-AACGTTTAGATCACGTTGGAAGAGGA 898
Query 902 GTTTCCCACAGATTGAGCTGAGTGTCTATGGATTGTGGGCTTATGATGCTACCACCGCAC 961
| ||||||||||| ||||||| ||||||||||||||||||||||||||| ||||| ||||
Sbjct 899 GATTCCCACAGATGGAGCTGAATGTCTATGGATTGTGGGCTTATGATGCGACCACTGCAC 958
Query 962 TAGCGATAGCTGTTGAAGAAGCTGGAATAGATAACATGACTTTCAGTAATGTGGAT-CTT 1020
| || || || ||||||| || |||||| |||||||||||||||||||||||||| |
Sbjct 959 TGGCCATGGCCATTGAAGATGCGGGAATAAATAACATGACTTTCAGTAATGTGGATACGG 1018
Query 1021 GGAAGGGATGTTTCTGAACTTGAAGTTCTTGGTTTATCTCAATACGGTCCAAAGCTTCTC 1080
||||| |||||||||||||||| | |||||||||||| |||| |||||||||||||||
Sbjct 1019 GGAAGA-ATGTTTCTGAACTTGATGGTCTTGGTTTATCACAATTTGGTCCAAAGCTTCTC 1077
Query 1081 CAGACACTCTCAACAATTCAGTTCAAAGGACTCGCTGGAGATTTTCGTTTTGTTAACAGG 1140
||||| |||||||| ||||||||||||| || || ||||| || | |||||| | | ||
Sbjct 1078 CAGACGGTCTCAACAGTTCAGTTCAAAGGTCTTGCAGGAGACTTCCATTTTGTCAGCGGG 1137
Query 1141 CAACTACAGCCATCGGTGTTTGAGATTGTTAAT 1173
||||| || |||||||||||||||||||| |||
Sbjct 1138 CAACTGCAACCATCGGTGTTTGAGATTGTCAAT 1170
> AT2G24710.1 | Symbols: ATGLR2.3, GLR2.3 | glutamate receptor
2.3 | chr2:10516880-10520549 REVERSE LENGTH=2688
Length=2688
Score = 1134 bits (614), Expect = 0.0
Identities = 1003/1187 (84%), Gaps = 42/1187 (4%)
Strand=Plus/Plus
Query 13 AAAG-TTttcttcttcatcttgctcttcttcttctcctccttcAAGGTGGAAGTCAGTAG 71
|||| ||||||||| |||||||||| ||||||||| || || ||||| ||| ||
Sbjct 12 AAAGCTTTTCTTCTGCATCTTGCTCGTCTTCTTCTTCT-GTT-----TGGAATTCAACAG 65
Query 72 AGGACAGAACAACGG-AAGAACCAAAGTCAATGTCGGTGTTGTAACAGATGTTGGA-ACT 129
||||||||||||||| || |||| |||| ||||||||||||||||||||| | || |||
Sbjct 66 AGGACAGAACAACGGCAA-AACCCTAGTCGATGTCGGTGTTGTAACAGATG-TCGATACT 123
Query 130 TCATACTCGGACGTTGCCATGCTCTGCATCAACATGTCT-CTAGCCGATTTCTACTCTTC 188
||| ||||| | |||| |||||||||||||||||||||| ||| ||||||||||||||
Sbjct 124 TCACACTCGAAGGTTGTCATGCTCTGCATCAACATGTCTATTAG-TGATTTCTACTCTTC 182
Query 189 TC-GTCCCCAATTCCAGACAAGGCTTGTCGTCAACGTTGGCGACTCC-AAAGAAGACGTC 246
| |||||| || ||||||||||||| |||||||| || |||||| |||| |||||
Sbjct 183 -CAATCCCCAGTTTGAGACAAGGCTTGTTGTCAACGTAGGTGACTCCAAAAG-TGACGTT 240
Query 247 GTCGGTGCCGC-ATCTGCAGCTATTGAGCTGATAAAGAACAAGA-AAGTGAAAGCGATTT 304
|| |||||||| || ||||||| |||| |||||||||||||| | ||||||| || ||||
Sbjct 241 GTAGGTGCCGCGAT-TGCAGCTCTTGACCTGATAAAGAACAA-ACAAGTGAAGGCTATTT 298
Query 305 TGGGGCCATGGACTTCAATGCAAGCTCATTTTTTGGTTGAGATTGGCCAAAAGTCACGAG 364
||||||||||||| || ||||||||||| || || | ||||||||||||||||| || |
Sbjct 299 TGGGGCCATGGACATCTATGCAAGCTCACTTCCTGATCGAGATTGGCCAAAAGTCCCGGG 358
Query 365 TTCCGATTATTTCCTACTCTGCAACAAGCCCGTTTCTTACATCTCTCCGTAGTCCATACT 424
|||| ||| ||||||| |||||||||||||| ||||||| || || |||||||||||||
Sbjct 359 TTCCTATTGTTTCCTATTCTGCAACAAGCCCAATTCTTACTTCCCTTCGTAGTCCATACT 418
Query 425 TCCTT-CGTGCTACATACGAGGACTCCTCTCAAG-TAAACGCCGTAAAAGCTATTATCAA 482
| ||| |||||||| ||||| ||||||| ||||| | ||| | ||||||| || |||||
Sbjct 419 T-CTTACGTGCTACGTACGAAGACTCCTTTCAAGTTCAAC-CAATAAAAGCCATCATCAA 476
Query 483 GTTGTTTGGCTGGCGAGAAGCTGTACCTGTTTACGTAGACAACACGTTTGGAGAAGGTAT 542
||||| || ||| |||||| ||| || |||||| | |||||||| ||||| ||||||||
Sbjct 477 ATTGTTCGGATGGAGAGAAGTTGTGCCAGTTTACATTGACAACACCTTTGGTGAAGGTAT 536
Query 543 AATGCCTCGTCTCACAGATGCATTACAAGAAATTAATGTTCGAATACCTTATAGATCTGT 602
|||||||||||| || ||||| |||||||| |||||||| || |||||||||||||| ||
Sbjct 537 AATGCCTCGTCTTACCGATGCTTTACAAGATATTAATGTCCGGATACCTTATAGATCCGT 596
Query 603 TATCGCTCTCAATGCCACGGATCAAGATATCTCCGTGGAGCTTCTCAAAATGATGACCAT 662
||||||| |||||||||| ||||| || ||||||||||||||||| || ||||||| |||
Sbjct 597 TATCGCTATCAATGCCACTGATCATGAAATCTCCGTGGAGCTTCTTAAGATGATGAACAT 656
Query 663 GCCCACTAGAGTCTTCATTGTCCACATGTACTCTTCTCTTGCCTCAAGAGTCTTTATAAA 722
|||||| ||||| ||| ||||||||||||||| | ||||||||||||| |||| || ||
Sbjct 657 GCCCACAAGAGTGTTCCTTGTCCACATGTACTATGATCTTGCCTCAAGATTCTTCATTAA 716
Query 723 AGCTAAGGAGATTGGTTTGATGAAACCAGGATATGTATGGATCCTTACCAATAGTGTAAC 782
||| || ||| ||||||||||| ||||||||||||| ||||||||||||||| | || |
Sbjct 717 AGCAAAAGAGCTTGGTTTGATGGAACCAGGATATGTCTGGATCCTTACCAATGGAGTTAT 776
Query 783 CGATGACTT-AGCTACGATGAATGAGACGGATGTTGAGGCTATGGAGGGCGTACTT-GGT 840
||||||||| || | ||| |||||||||| |||||||||||||||||| ||| || |||
Sbjct 777 CGATGACTTAAG-TTTGATAAATGAGACGGCTGTTGAGGCTATGGAGGGGGTA-TTGGGT 834
Query 841 GTTAAAACTTATATT-CAGAAATCCATAGAGCTGGACAACTTTAGATCACGATGGAGGAA 899
|||||||||||||| || |||||| ||| || || || |||||||| ||||||| |||
Sbjct 835 ATTAAAACTTATATTCCA-AAATCCCCAGATCTTGAGAAGTTTAGATCTCGATGGA-GAA 892
Query 900 GAGT-TTCCCACAGATTGAGCTGAGTGTCTATGGAT-TGTGGGCTTATGATGCTACCACC 957
| | ||||||| | | ||||||||||||||||| | |||||||||||||||||||||||
Sbjct 893 GTTTATTCCCACGGGTGGAGCTGAGTGTCTATGG-TCTGTGGGCTTATGATGCTACCACC 951
Query 958 GCACTAGCGATAGCTGTTGAAGAAGCTGGAATAGATAACATGACTTTCAGTAA--TG-TG 1014
||||||||| |||| ||||||||||||||| | ||||||||||||||||||| || ||
Sbjct 952 GCACTAGCGGTAGCCATTGAAGAAGCTGGAACAAATAACATGACTTTCAGTAAAGTGGTG 1011
Query 1015 GAT-CTTGGAAGGGATGTTTCTGAACTTGAAGTTCTTGGTTTATCTCAATACGGTCCAAA 1073
||| | ||| || |||||||||||||||||| ||||||||||||||| | |||||||||
Sbjct 1012 GATACAGGGA-GGAATGTTTCTGAACTTGAAGCTCTTGGTTTATCTCAGTTCGGTCCAAA 1070
Query 1074 GCTTCTCCAGACACTCTCAACAATTCAGTTCAAAGGACTCGCTGGAGATTTTCGTTTTGT 1133
||||||||| ||||||| |||| ||||||||| |||||| || ||||| ||||||||| |
Sbjct 1071 GCTTCTCCAAACACTCTTAACAGTTCAGTTCAGAGGACTTGCAGGAGAGTTTCGTTTT-T 1129
Query 1134 TAA-CAGGCAACTACAGCCATCGGTGTTTGAGATTGTTAATGTAATC 1179
| | ||||||| || |||||||||||||||||||| ||| |||||
Sbjct 1130 TCCGCGGGCAACTGCAACCATCGGTGTTTGAGATTGTCAATATAATC 1176
Score = 525 bits (284), Expect = 8e-148
Identities = 536/657 (82%), Gaps = 20/657 (3%)
Strand=Plus/Plus
Query 1192 AGCATAGGTACTTTATCAACTTGGCAAGATCATCTTAAGTTGATAATATGGCCTGGAGAG 1251
|||||| | ||||||| |||||| ||||||||||||| || ||||||||||||||
Sbjct 1252 AGCATAAGCGCTTTATCTACTTGGAAAGATCATCTTAAACACATTGTATGGCCTGGAGAG 1311
Query 1252 GCTAATTCTGTTCCCAAAGGATGGGAGATCCCAACGAACGGGAGGAGGTTGCGCATTGGA 1311
|| |||||||||| ||||||||| ||||||| || || |||| || |||||| ||||||
Sbjct 1312 GCGGATTCTGTTCCGAAAGGATGGCAGATCCCGACTAAGGGGAAGAAGTTGCGTATTGGA 1371
Query 1312 GTT-CCAAAGAGAACCGGTTACACCGATCTTGTAAAAGTCACAAGGGATCCTATCACCAA 1370
||| ||||| |||||||| ||||| |||||||| |||||||||||||||||||| |||||
Sbjct 1372 GTTCCCAAA-AGAACCGGCTACACTGATCTTGTGAAAGTCACAAGGGATCCTATTACCAA 1430
Query 1371 TTCACCAGTAGTTACAGGTTTCTGCATAGATTTCTTTGAGGCTGTGATTCGAGCAA-TGC 1429
|||| | ||||| |||||||| ||||||||||||||||||||||||||||||| || |||
Sbjct 1431 TTCAACTGTAGTCACAGGTTTTTGCATAGATTTCTTTGAGGCTGTGATTCGAG-AACTGC 1489
Query 1430 CTTATGACATCTCTTACGATTTTATTCCTTTTGAAACTCCTGATGGTAAACCAGCTGGGG 1489
|||||||| |||| || || || || ||||| |||| || || || ||| |||| ||
Sbjct 1490 CTTATGACGTCTCATATGAGTTCATACCTTTCGAAAAACCCGACGGAAAAACAGCCGGTA 1549
Query 1490 ACCACAACT-CTCTAGTATACCAAGTCTACCTCGGGATATATGACGCGGTTGTGGGAGAT 1548
| ||||| || | || |||||||| |||||||||| |||||| |||||||||||||||
Sbjct 1550 ATTACAACGACT-TGGTCTACCAAGTGTACCTCGGGAGATATGATGCGGTTGTGGGAGAT 1608
Query 1549 ACGACTATACTAGTAAACAGGTCCTCTTATGTCGACTTCACATTTCCGTTCATTAAATCA 1608
|| || ||| | || |||||||| ||||| |||||||||||||| || || |||||||||
Sbjct 1609 ACAACCATATTGGTGAACAGGTCTTCTTACGTCGACTTCACATTCCCATTTATTAAATCA 1668
Query 1609 GGTGTGGGATTGATTGTTCCCGTCGA-AGACCAAGTAAAAAGAGAC-AGTATTAGTTT-C 1665
||||| |||||||| ||| | || ||||| |||||| |||||| | ||| | ||| |
Sbjct 1669 GGTGTCGGATTGATCGTTGAAAT-GACAGACCCAGTAAAGAGAGACTA-TAT-ACTTTTC 1725
Query 1666 TTGAAGCCTTTAACATGGAAACTGTGGATGACTACATTTCTCTTCGT-CTTTCTAATTGG 1724
|||| ||||| |||||||||| ||| ||||| | ||| ||| | | ||| || | ||
Sbjct 1726 ATGAAACCTTTGTCATGGAAACTATGGTTGACTTCCTTTATCT-CTTTCTTCCTTGTCGG 1784
Query 1725 ATT-TACTGTTTGGGCTGTTGAACATAGG-GTTAACCCGGACTTCCGTGGACCACGTAGG 1782
|| |||||| |||| | | ||| ||| | || || |||||||| ||||||| | |||
Sbjct 1785 -TTGTACTGTATGGGTTCTCGAATATAAGCGT-AATCCGGACTTTAGTGGACCGCCTAGA 1842
Query 1783 TACCAAGCTAGTACAATCT-TCTGGTTTGCTTTCTCTACCATGGTTTTTGCTCCAAG 1838
| |||||||||||| |||| | |||||||| ||||||||||||||||||||||||||
Sbjct 1843 TTCCAAGCTAGTACCATCTGT-TGGTTTGCCTTCTCTACCATGGTTTTTGCTCCAAG 1898
> AT2G24750.1 | Symbols: | pseudogene, similar to Avr9/Cf-9 rapidly
elicited protein 141, similar to GB:AAB61068; blastp match
of 43% identity and 5.0e-152 P-value to GP|30013669|gb|AAP03877.1||AY220478
Avr9/Cf-9 rapidly elicited protein 141
{Nicotiana tabacum} | chr2:10539001-10545985 FORWARD LENGTH=6985
Length=6985
Score = 1000 bits (541), Expect = 0.0
Identities = 734/824 (89%), Gaps = 25/824 (3%)
Strand=Plus/Plus
Query 1528 TATGACGCGGTTGTGGGAGATACGACTATACTAGTAAACAGGTCCTCTTATGTCGACTTC 1587
|||||||||||||||||||||||||||||| | | ||| |||||||||||||||||||||
Sbjct 5437 TATGACGCGGTTGTGGGAGATACGACTATATTGGCAAATAGGTCCTCTTATGTCGACTTC 5496
Query 1588 ACATTTCCGTTCATTAAATCAGGTGTGGGATTGATTGTTCCCGTCGAAGACCAAGTAAAA 1647
||| |||| || | |||||| ||||||||||||||||| ||||| ||||||||||| |
Sbjct 5497 ACA-TTCCATTTACTAAATCTGGTGTGGGATTGATTGTCCCCGTAGAAGACCAAGTGGCA 5555
Query 1648 AGAGACAGTATTAGTTTCTTGAAGCCTTTAACATGGAAACTGTGGATGACTACATTTCTC 1707
||||||||||| |||||||||||||| |||||||||||||| ||||||||| | ||| ||
Sbjct 5556 AGAGACAGTATCAGTTTCTTGAAGCCCTTAACATGGAAACTTTGGATGACTTCCTTTTTC 5615
Query 1708 TTCGTCTTTCTAATTGGATTTACTGTTTGGGCTGTTGAACATAGGGTTAACCCGGACTTC 1767
||| |||| || ||||| ||||||||||||| | ||||||||||| |||| ||||||||
Sbjct 5616 TTCTTCTTCCTCATTGGTTTTACTGTTTGGGTTATTGAACATAGGATTAATCCGGACTTT 5675
Query 1768 CGTGGACCACG-TAGGTACCAAGCTAGTACAATCTTCTGGTTTG-CTTTCTCTACCATGG 1825
|| |||||| | || |||||||| |||||||||||||||||||| |||| ||||||||||
Sbjct 5676 CGCGGACCA-GCTAAGTACCAAGTTAGTACAATCTTCTGGTTTGCCTTT-TCTACCATGG 5733
Query 1826 TTTTTGCTCCAAGTAAAATTCAGTCTCCCATTGTACATATCTCAACACATAGTGATTGTT 1885
|||||||||||||| || | | |||| || | |||||||||||| ||||||| ||||
Sbjct 5734 TTTTTGCTCCAAGT--AA---A-T-TCCC-TT-TCCATATCTCAACATATAGTGAGTGTT 5784
Query 1886 --ATATATA-TACTTTCCTTAATGCTTACTCTATCGAAT-TGCGGTTTGTAGGAGAAAGA 1941
| | ||| | |||||||||||||||||||||| ||| ||| ||| ||||||||||
Sbjct 5785 AAAAAAATACTTCTTTCCTTAATGCTTACTCTAT-TAATATGCAACTTGCAGGAGAAAGA 5843
Query 1942 GTATTCAGTTTTGGAGCTAGGCTTTTGGTTATAACATGGTACTTCATCGTGCTCTTGTTG 2001
|| ||||| ||||||||||||||| ||||||| ||||||||||| || |||||| |||||
Sbjct 5844 GTGTTCAGCTTTGGAGCTAGGCTTCTGGTTATCACATGGTACTTTATTGTGCTCGTGTTG 5903
Query 2002 ACTCAAAGTTACACCGCCAGCTTGGCGTCCCTTTTGACATCACGACAACTTGATCCAACC 2061
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 5904 ACTCAAAGTTACACAGCCAGCTTGGCGTCCCTTTTGACATCACGACAACTTGATCCAACC 5963
Query 2062 ATAACTAGCATGAGAAGTTTGCTTGAGAAAGGAGAAAATGTGGGATATCCAAGGACATCA 2121
|||| ||||||||||||||||| ||||||||||||||||||||||| ||||||||||||
Sbjct 5964 GTAACCAGCATGAGAAGTTTGCTCGAGAAAGGAGAAAATGTGGGATAACCAAGGACATCA 6023
Query 2122 TTCATCTTTGGAAAACTTAAAGAATCGGGTTTCACT-CGATCCAGCCTCATACCCTTTGA 2180
|||||||||||||||||||||||||| ||||||||| | |||||||||||||||||||||
Sbjct 6024 TTCATCTTTGGAAAACTTAAAGAATCAGGTTTCACTTC-ATCCAGCCTCATACCCTTTGA 6082
Query 2181 TAGCGCGGAAGACTGCGACAAGCTTTTGAGAAAAGGATCTGAA-AAAGGGGGTGT-TGCT 2238
|||||||||||| |||||||||||||||||||||||| | || ||||| ||| | | ||
Sbjct 6083 TAGCGCGGAAGATTGCGACAAGCTTTTGAGAAAAGGACCA-AAGAAAGGCGGTATCT-CT 6140
Query 2239 GCAGCTTTCTTGGAAGTACCCTACATGAGGCTCTTTCTTGGACAATACTGCAACGCTTAT 2298
||||||||| |||||||||||||| |||||||||||||||||||||||||||| | ||||
Sbjct 6141 GCAGCTTTCATGGAAGTACCCTACCTGAGGCTCTTTCTTGGACAATACTGCAAAGATTAT 6200
Query 2299 CAAATGGTTGAAGAACCCTTTAGCGTTGATGGATTCGGCTTCGT 2342
|||||||||||||||||||||||||||||||||||||| |||||
Sbjct 6201 CAAATGGTTGAAGAACCCTTTAGCGTTGATGGATTCGGTTTCGT 6244
Score = 883 bits (478), Expect = 0.0
Identities = 794/945 (84%), Gaps = 28/945 (3%)
Strand=Plus/Plus
Query 263 CAGCTATTGAGCTGATAAAGAACAAGAAAGTGAAAGCGATTTTGGGGCCATGGACTTCAA 322
||||| || ||||||||||||||||| | ||| ||||||||||||||| ||||| || |
Sbjct 4003 CAGCTCTTAAGCTGATAAAGAACAAGCACGTGGTAGCGATTTTGGGGCCTTGGACATCCA 4062
Query 323 TGCAAGCTCATTTTTTGGTTGAGATTGGCCAAAAGTCACGAGTTCCGATTATTTCCTACT 382
|||||||||||||| || |||| ||||| ||||| || || || |||||| |||| ||||
Sbjct 4063 TGCAAGCTCATTTTATGATTGATATTGGACAAAAATCTCGGGTGCCGATTGTTTCTTACT 4122
Query 383 CTGCAACAAGCCCGTTTCTTACATCTCTCCGTAGTCCATACTTCCTT-CGTGCTACATAC 441
|||||||||| ||||||||||| ||||| || ||||||||||| || |||||||||||
Sbjct 4123 CTGCAACAAGTCCGTTTCTTACTTCTCTACGCAGTCCATACTT-TTTCCGTGCTACATAT 4181
Query 442 GAGGACTCCTCTCAAGTAAACGCCGTAAAAGCTATTATCAAGTTGTTTGGCTGGCGAGAA 501
|||||||||| ||||||||| ||| ||||| |||| |||||||||||||| ||| |||||
Sbjct 4182 GAGGACTCCTTTCAAGTAAAGGCCATAAAATCTATCATCAAGTTGTTTGGGTGGAGAGAA 4241
Query 502 GCT-GTACCTGTTTACGTAGACAACACGTTTGGAGAAGGTATAATGCCTCGTCTCACAGA 560
| | || | ||||||| | |||||| | |||||||||||||| ||||| | ||| || ||
Sbjct 4242 G-TCGTGCTTGTTTACATCGACAACTCATTTGGAGAAGGTATTATGCCACATCTTACTGA 4300
Query 561 TGCATTACAAGAAATTAATGTTCGAATACCTTATAGATCTGTTATCGCTCTCAATGCCAC 620
|||||||||||| ||||| ||||||||| | || |||| ||||||| |||||||||||||
Sbjct 4301 TGCATTACAAGAGATTAACGTTCGAATATCATACAGATATGTTATCTCTCTCAATGCCAC 4360
Query 621 GGATCAAGATATCTC-CGTGGAGC-TTCTCAAAATGATGACCATGCCCACTAGAGTCTTC 678
||| | || ||||| | | |||| |||| || ||||||||||||||||| ||||| ||
Sbjct 4361 TGATTATGAAATCTCTC-TAGAGCTTTCT-AAGATGATGACCATGCCCACAAGAGTTTTT 4418
Query 679 ATTGTCCACATGTACTCTTCTCTTGCCTCAAGAGTCTTTA-TAAAAGCTAAGGAGATTGG 737
|| ||||||||| |||||||||||||||||||||||||| ||||| |||| |||||||
Sbjct 4419 ATCGTCCACATGCCCTCTTCTCTTGCCTCAAGAGTCTTTACTAAAA-TTAAGAAGATTGG 4477
Query 738 TTTGATGAAACCAGGATATGTATGGATCCTTACCAATAGTGTAACCGATGACTT-AGCTA 796
||||||||||||||||||||| ||||||||||||| | | ||||||||||| || || |
Sbjct 4478 TTTGATGAAACCAGGATATGTTTGGATCCTTACCAGTGGAGTAACCGATGAGTTAAG-TT 4536
Query 797 CGATGA-ATGAGACGGATGTTGAGGCTATGG-AGGGCGTACTT-GGTGTTAAAACTTATA 853
| | | ||||| ||| | |||||||||||| |||| ||| || ||||||||||||||||
Sbjct 4537 TGGT-AGATGAGGCGGGTATTGAGGCTATGGAAGGG-GTA-TTGGGTGTTAAAACTTATA 4593
Query 854 TTCAGAAATCCATA-GAGCTGGACAACTTTAGATCACGATGGAGGAAG-AGTTTCCCACA 911
||| ||||| || | || || || || |||||| | | ||||||||| || ||||||
Sbjct 4594 TTCGGAAAT-CAAATGACCTCGAAAAGTTTAGAGCTTGTTGGAGGAAGAAG-TTCCCAGG 4651
Query 912 GATTGAGCTGAGTGTCTATGGATTGTGGGCTTATGATGCTACCACCGCACTAGCGATAGC 971
||| || |||| |||||||||||||||||||||||||||||||| |||| | || |||||
Sbjct 4652 GATGGACCTGAATGTCTATGGATTGTGGGCTTATGATGCTACCATCGCATTGGCAATAGC 4711
Query 972 TGTTGAAGAAGCTGGAATAGATAACATGACTTTCAGTAATGTGGATCTTG-GAAGGGATG 1030
| ||||||||||||||| ||||||||||||||| ||||||||||| || ||| | |||
Sbjct 4712 TATTGAAGAAGCTGGAACAGATAACATGACTTTTAGTAATGTGGAG-TTCAGAAAGAATG 4770
Query 1031 TTTCTGAACTTGAAGTTCTTGGTTTATCTCAATACGGTCCAA-AGCTTCTCCAGACACTC 1089
| ||||||||||||| ||||||||| |||||||||||||||| | |||| | ||||||||
Sbjct 4771 TGTCTGAACTTGAAGCTCTTGGTTTTTCTCAATACGGTCCAAGA-CTTCGCAAGACACTC 4829
Query 1090 TCAACAATTCAGTTCAAAGGACTCGCTGGAGATTTTCGTTTTGTTAACAGG-CAACTACA 1148
||||| ||| ||| |||||||| || |||||||| |||||||| | ||| ||||||||
Sbjct 4830 ACAACAGTTCGGTTGAAAGGACTTGCAGGAGATTTCCGTTTTGTCGA-AGGACAACTACA 4888
Query 1149 GCCATCGGTGTTTGAGATTGTTAATGTAATCGGGACAAGGGAAAG 1193
|||| |||||||||||| |||||||| || || || || |||||
Sbjct 4889 ACCATGGGTGTTTGAGATAGTTAATGTGATTGGAACCAGAGAAAG 4933
Score = 344 bits (186), Expect = 3e-93
Identities = 278/323 (86%), Gaps = 4/323 (1%)
Strand=Plus/Plus
Query 1204 TTATCAACTTGGCAAGATCATCTTAAGTTGATAATATGGCCTGGAGAGGCTAATTCTGTT 1263
||||| ||||||||||||||||||||| |||||||||||| ||||||||||| | ||||
Sbjct 5007 TTATCCACTTGGCAAGATCATCTTAAGCAGATAATATGGCCCGGAGAGGCTAACTATGTT 5066
Query 1264 CCCAAAGGATGGGAGATCCCAACGAACGGGAGGAGGTTGCGCATTGGAGTTCCAAAGAGA 1323
||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||
Sbjct 5067 CCCAAAGGATGGGAGATCCCAACGAACGGGAAGAGGTTGCGCATTGGAGTTCCAAAAAGA 5126
Query 1324 ACCGGTTACACCGATCTTGTAAAAGTCACAAGGGATCCTATCACCAATTCACCAGTAGTT 1383
|| ||||||||||||||||| | ||||| | |||||||| ||| ||||||| || |||
Sbjct 5127 ACTGGTTACACCGATCTTGTGGAGGTCACCATGGATCCTACCACGAATTCACAAGAAGTC 5186
Query 1384 ACAGGTTTCTGCATAGATTTCTTTGAGGCTGTGATTCGAGCAATGCCTTATGACATCTCT 1443
| |||||| ||||||| ||||||||| |||||||| | | ||||||||||||||||||
Sbjct 5187 AAAGGTTTTTGCATAGCTTTCTTTGAAGCTGTGATCCAAAAAATGCCTTATGACATCTCC 5246
Query 1444 TACGATTT-TATTCCTTTTGAAAC-TCCTGATGGTAAACCAGCTGGGGACCACAACTCTC 1501
|| ||||| | ||||||||||||| || || ||||||||||| || | |||||| ||
Sbjct 5247 TATGATTTCT-TTCCTTTTGAAACATCG-GACGGTAAACCAGCCGGAAATCACAACGATC 5304
Query 1502 TAGTATACCAAGTCTACCTCGGG 1524
|| | |||||||| ||||| |||
Sbjct 5305 TAATCTACCAAGTTTACCTTGGG 5327
Score = 333 bits (180), Expect = 5e-90
Identities = 298/354 (84%), Gaps = 12/354 (3%)
Strand=Plus/Plus
Query 2341 GTTTTTCCAATTGGATCACCTCTGGTTGCTGATGTATCAAGGGCCATCCTAAAAGTGGCA 2400
|||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 6318 GTTTTTCCAATTGGGTCACCACTGGTTGCTGATGTATCAAGGGCCATCCTAAAAGTGGCG 6377
Query 2401 GAATCA-CCAAAAGGGAAGGAGCTTGAGCTCGCGTGGTTCAAAAAGAAAGAAGAAACATG 2459
|||||| ||||| | ||||| ||||| ||| | |||||||| ||||| ||||| ||
Sbjct 6378 GAATCATCCAAA-GCAAAGGATCTTGATCTCAAATATTTCAAAAATAAAGATGAAACTTG 6436
Query 2460 TCCAAATCCAGTCACAAC-CGCAGATCCAAATCCGTCTATTTCATCGAGGCAGCTCGGCG 2518
|| ||||||||||||| | |||||||||||||||| | ||||| ||||||||||| |
Sbjct 6437 CCCGGATCCAGTCACAACTC-CAGATCCAAATCCGTCAACATCATCTAGGCAGCTCGGTG 6495
Query 2519 TAGACAGTTTCTGGGTTTTGTTTCTCATTGCTTTCCTAATGTGTGTTTTCACCCTTGGAA 2578
|||||||||||||| |||||||| | |||||||| |||||||| |||||||||| ||||
Sbjct 6496 TAGACAGTTTCTGGCTTTTGTTTGTTGTTGCTTTCATAATGTGTCTTTTCACCCTCGGAA 6555
Query 2579 AGTTCGCTTTCTTTTT-TGTCAAGAATAATCAGGGTAAT-AGTCTGTGGCAAGAGTTTCA 2636
| ||| ||||||| || | ||||||| ||||||| | | | | ||||| ||||||||||
Sbjct 6556 AATTCACTTTCTTGTTCT-TCAAGAAAAATCAGGTTGCTGATT-TGTGGAAAGAGTTTCA 6613
Query 2637 T-GAACCAGATGAA-ATTTCGTATATCAACAACGTGGAGAAATGTCCGTGTTCG 2688
| || ||||||| | ||| |||| ||||| ||||||||||||||| | ||||||
Sbjct 6614 TCGA-CCAGATGGAGATT-CGTACATCAATAACGTGGAGAAATGTTCTTGTTCG 6665
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 137106255219
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5