BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg899849
Length=753
Score E
Sequences producing significant alignments: (Bits) Value
AT2G24720.1 | Symbols: ATGLR2.2, GLR2.2 | glutamate receptor 2.... 769 0.0
AT2G24750.1 | Symbols: | pseudogene, similar to Avr9/Cf-9 rapi... 501 4e-141
> AT2G24720.1 | Symbols: ATGLR2.2, GLR2.2 | glutamate receptor
2.2 | chr2:10522783-10525840 REVERSE LENGTH=2763
Length=2763
Score = 769 bits (416), Expect = 0.0
Identities = 634/739 (86%), Gaps = 16/739 (2%)
Strand=Plus/Plus
Query 21 cttcttcttcttgctcttcttctCCTTGTGCGTT-GAATTCAGCAGAGGACA-GA-AA-- 75
|||||| |||||| ||||||||| | ||| || ||| |||||||||||| || ||
Sbjct 27 CTTCTTGTTCTTGTTCTTCTTCTTC-TGT---TTGGAAAGCAGCAGAGGACAGGACAACG 82
Query 76 GAAATAACCGAAGTCAATGTCGGTGTTGTAACAGATGTGGGAACTTCATACTCAGATGTT 135
| || |||| ||||||| ||||||||||| ||||||| || ||||||||| | ||||||
Sbjct 83 GCAA-AACCCAAGTCAACATCGGTGTTGTATCAGATGTCGGTACTTCATACCCGGATGTT 141
Query 136 GCCATGCTCTGCATCAACATGTCTCTAGCCGATTTCTACTCTTCTCGTCCCCAATTCCAG 195
||||||||||||||||| |||||||| |||||||||||||||||||||||||| || |||
Sbjct 142 GCCATGCTCTGCATCAATATGTCTCTTGCCGATTTCTACTCTTCTCGTCCCCAGTTTCAG 201
Query 196 ACAAGGCTTGTTGTCAACATCGGCGACTCCAGAAACGACGTCCTTGGTGCCGCTGCTGCA 255
||||||||||| |||||| | || ||||||| ||| ||||| | |||||||| |||||
Sbjct 202 ACAAGGCTTGTCGTCAACGTTGGTGACTCCAAAAATGACGTTGTAGGTGCCGCAACTGCA 261
Query 256 GCTCTTGAACTGATAAAGATTAAGAAAGTGAAAGCGATATTGGGACCATGGACATCTATG 315
||| |||| |||||||||| ||| |||||||||| || ||||| |||||||||||||||
Sbjct 262 GCTATTGATCTGATAAAGAACAAGCAAGTGAAAGCTATTTTGGGGCCATGGACATCTATG 321
Query 316 CAAGCTCATTTCTTGATCGAGATTGGCCAAAAATCCCAGGTGCC-GATTGTTTCCTACTC 374
||||||||||||||||||||||||||||||||||| | ||| || | |||||||||| ||
Sbjct 322 CAAGCTCATTTCTTGATCGAGATTGGCCAAAAATCTCGGGTTCCTG-TTGTTTCCTATTC 380
Query 375 TGCAACAAGTCCGTTTCTTACTTCTCTTCGTAGTCCATACTTCTTTCGTGCTACGTACGA 434
||||||||| || | |||||||||||| || |||||||||||||| || ||||| || ||
Sbjct 381 TGCAACAAGCCCATCTCTTACTTCTCTCCGCAGTCCATACTTCTTCCGAGCTACATATGA 440
Query 435 AGACTCTTCTCAAGTAAACGCCATAAAAGCTATCATCAAGTTGTTTGGATGGAGAGAAGT 494
||||| |||||||| | || ||||||||||| |||||||||||||| |||||||||||
Sbjct 441 GGACTCCTCTCAAGTGCATGCTATAAAAGCTATTATCAAGTTGTTTGGGTGGAGAGAAGT 500
Query 495 CGTGCCTGTTTACATTGACAACACCTTTGGAGAAGGTATAATGCCTCGTCTCACTGATGC 554
||||| |||||||| |||||||| ||||||||||||||||||||||||||||||||| |
Sbjct 501 TGTGCCAGTTTACATCGACAACACTTTTGGAGAAGGTATAATGCCTCGTCTCACTGATTC 560
Query 555 ATTACAAGAGATAAACGTTCGCATACCATACAGGTCTGTTATCGCTCTCAATGCCACGGA 614
||||||||| || || ||||| ||||| || || || |||||| ||||||||||||||||
Sbjct 561 ATTACAAGATATTAATGTTCGGATACCTTATAGATCCGTTATCCCTCTCAATGCCACGGA 620
Query 615 TCATG-TAATCTCCATGGAGCTTCTTAAGATGATGA-CAAACCCCACAAGAGTGTTCATT 672
||| | || |||| ||||||||||||||||||||| || ||| |||||||||||||||
Sbjct 621 TCAAGATA-TCTCTGTGGAGCTTCTTAAGATGATGAACATGCCC-ACAAGAGTGTTCATT 678
Query 673 GTCCACATGTACTCGACTCTTGCATCCAGATTCTTCATTAAAGCCAAGGAGATTGGTTTG 732
|||||||||| ||| |||| || || | | ||||||||||||| |||||| ||||||||
Sbjct 679 GTCCACATGTCCTCTTCTCTAGCCTCAACAGTCTTCATTAAAGCAAAGGAGCTTGGTTTG 738
Query 733 ATGAAACCGGGCTATGTCT 751
|||||||| || |||||||
Sbjct 739 ATGAAACCAGGATATGTCT 757
> AT2G24750.1 | Symbols: | pseudogene, similar to Avr9/Cf-9 rapidly
elicited protein 141, similar to GB:AAB61068; blastp match
of 43% identity and 5.0e-152 P-value to GP|30013669|gb|AAP03877.1||AY220478
Avr9/Cf-9 rapidly elicited protein 141
{Nicotiana tabacum} | chr2:10539001-10545985 FORWARD LENGTH=6985
Length=6985
Score = 501 bits (271), Expect = 4e-141
Identities = 427/502 (85%), Gaps = 12/502 (2%)
Strand=Plus/Plus
Query 254 CAGCTCTTGAA-CTGATAAAGATTAAGAAAGTGAAAGCGATATTGGGACCATGGACATCT 312
|||||||| || |||||||||| ||| | ||| |||||| ||||| || ||||||||
Sbjct 4003 CAGCTCTT-AAGCTGATAAAGAACAAGCACGTGGTAGCGATTTTGGGGCCTTGGACATCC 4061
Query 313 ATGCAAGCTCATTTCT-TGATCGAGATTGGCCAAAAATCCCAGGTGCCGATTGTTTCCTA 371
|||||||||||||| | |||| || ||||| |||||||| | ||||||||||||||| ||
Sbjct 4062 ATGCAAGCTCATTT-TATGATTGATATTGGACAAAAATCTCGGGTGCCGATTGTTTCTTA 4120
Query 372 CTCTGCAACAAGTCCGTTTCTTACTTCTCTTCGTAGTCCATACTTCTTTC-GTGCTACGT 430
|||||||||||||||||||||||||||||| || ||||||||||| |||| ||||||| |
Sbjct 4121 CTCTGCAACAAGTCCGTTTCTTACTTCTCTACGCAGTCCATACTT-TTTCCGTGCTACAT 4179
Query 431 ACGAAGACTC-TTCTCAAGTAAACGCCATAAAAGCTATCATCAAGTTGTTTGGATGGAGA 489
| || ||||| || ||||||||| ||||||||| ||||||||||||||||||| ||||||
Sbjct 4180 ATGAGGACTCCTT-TCAAGTAAAGGCCATAAAATCTATCATCAAGTTGTTTGGGTGGAGA 4238
Query 490 GAAGTCGTGCCTGTTTACATTGACAACACCTTTGGAGAAGGTATAATGCCTCGTCTCACT 549
|||||||||| ||||||||| |||||| | |||||||||||||| ||||| | ||| |||
Sbjct 4239 GAAGTCGTGCTTGTTTACATCGACAACTCATTTGGAGAAGGTATTATGCCACATCTTACT 4298
Query 550 GATGCATTACAAGAGATAAACGTTCGCATACCATACAGGTCTGTTATCGCTCTCAATGCC 609
||||||||||||||||| |||||||| ||| ||||||| | ||||||| |||||||||||
Sbjct 4299 GATGCATTACAAGAGATTAACGTTCGAATATCATACAGATATGTTATCTCTCTCAATGCC 4358
Query 610 ACGGATCATGTAATCTC-CATGGAGCTT-CTTAAGATGATGACAAACCCCACAAGAGTGT 667
|| ||| ||| |||||| | | |||||| || ||||||||||| | ||||||||||| |
Sbjct 4359 ACTGATTATGAAATCTCTC-TAGAGCTTTCT-AAGATGATGACCATGCCCACAAGAGTTT 4416
Query 668 TCATTGTCCACATGTACTCGACTCTTGCATCCAGATTCTTCATTAAAGCCAAGGAGATTG 727
| || ||||||||| ||| ||||||| || ||| |||| | |||| ||| ||||||
Sbjct 4417 TTATCGTCCACATGCCCTCTTCTCTTGCCTCAAGAGTCTTTACTAAAATTAAGAAGATTG 4476
Query 728 GTTTGATGAAACCGGGCTATGT 749
||||||||||||| || |||||
Sbjct 4477 GTTTGATGAAACCAGGATATGT 4498
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 36570459016
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5