BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg899850

Length=573
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT2G24730.1 | Symbols:  | 60S ribosomal protein L4/L1 (RPL4C), ...   340    7e-93


> AT2G24730.1 | Symbols:  | 60S ribosomal protein L4/L1 (RPL4C), 
pseudogene,  blastp match of 68% identity and 7.9e-28 P-value 
to SP|Q9XF97|RL4_PRUAR 60S ribosomal protein L4 (L1). (Apricot) 
{Prunus armeniaca} | chr2:10526349-10527025 REVERSE 
LENGTH=677
Length=677

 Score =  340 bits (184),  Expect = 7e-93
 Identities = 228/249 (92%), Gaps = 3/249 (1%)
 Strand=Plus/Plus

Query  272  TGAATGCTGATTTGTCTAGGATTATTTATTCGGATGAGGTTCAGAGTGTGGTTAGACAGA  331
            |||||||||||||| ||||||||||| |||| ||||||||||||||||||||||||| ||
Sbjct  2    TGAATGCTGATTTGGCTAGGATTATTAATTCTGATGAGGTTCAGAGTGTGGTTAGACCGA  61

Query  332  TTGAGAAGGATGTGAAGAGAGCTGTGTTGAAGAAGAATCCTCTTAAGAATTTGAATGTGA  391
            ||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct  62   TTGAGAAAGATGTGAAGAGTGCTGTGTTGAAGAAGAATCCTCTTAAGAATTTGAATGTGA  121

Query  392  TGTTGAAGCTTAACCCGTATGCGAAGACTGCGAGAAGGATGTCTTTGTTGGCTGAAGATG  451
            |||||||||||||||| ||||| ||||||| ||| |||||||||||||||||||||| | 
Sbjct  122  TGTTGAAGCTTAACCCTTATGCTAAGACTGTGAGGAGGATGTCTTTGTTGGCTGAAGCTC  181

Query  452  AGAGAGTAAAGTCGAAAAGGGAGAAGCTCGAGAGGAAGAG-ACAGCCCATCTCAAAGATT  510
            ||||||| |||||||||| ||||||||||||||||||||| | | ||||| |||||||| 
Sbjct  182  AGAGAGTTAAGTCGAAAAAGGAGAAGCTCGAGAGGAAGAGGAAA-CCCATTTCAAAGAT-  239

Query  511  AATAGAATT  519
            | | |||||
Sbjct  240  ATTTGAATT  248



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 27528312556


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5