BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg899853
Length=2649
Score E
Sequences producing significant alignments: (Bits) Value
AT2G24720.1 | Symbols: ATGLR2.2, GLR2.2 | glutamate receptor 2.... 2737 0.0
AT2G24710.1 | Symbols: ATGLR2.3, GLR2.3 | glutamate receptor 2.... 2468 0.0
AT2G24750.1 | Symbols: | pseudogene, similar to Avr9/Cf-9 rapi... 1221 0.0
> AT2G24720.1 | Symbols: ATGLR2.2, GLR2.2 | glutamate receptor
2.2 | chr2:10522783-10525840 REVERSE LENGTH=2763
Length=2763
Score = 2737 bits (1482), Expect = 0.0
Identities = 2242/2605 (86%), Gaps = 68/2605 (3%)
Strand=Plus/Plus
Query 57 CAGTAGAGGACAGAACaa---aaaaaCAGAAGTCAATGTGGGTATTGTAACAGATGTCGG 113
||| ||||||||| |||| ||||| ||||||| | ||| ||||| |||||||| |
Sbjct 63 CAGCAGAGGACAGGACAACGGCAAAACCCAAGTCAACATCGGTGTTGTATCAGATGTC-G 121
Query 114 GATGA-TGCAT--TCAGACATTGAAATGCTCTGCATCAACATGTCTCTTGCAGATTTCTA 170
| | | | ||| | || ||| |||||||||||||| ||||||||||| ||||||||
Sbjct 122 G-T-ACTTCATACCCGGATGTTGCCATGCTCTGCATCAATATGTCTCTTGCCGATTTCTA 179
Query 171 CTCTTCTCGTCCCCATTTTCGGACAAGGATTGTCGTCAATGTCGGCGACTCAAAAAAGGA 230
||||||||||||||| |||| ||||||| |||||||||| || || ||||| ||||| ||
Sbjct 180 CTCTTCTCGTCCCCAGTTTCAGACAAGGCTTGTCGTCAACGTTGGTGACTCCAAAAATGA 239
Query 231 CGTTGTAGGT----C--TTG-AGC---TG--C---TCAAGAACAATG-AAGTGAAAGCGA 274
|||||||||| | || ||| || | | |||||||| | |||||||||| |
Sbjct 240 CGTTGTAGGTGCCGCAACTGCAGCTATTGATCTGATAAAGAACAA-GCAAGTGAAAGCTA 298
Query 275 TTTTGGGGCCATGGAGTTCAATGCAAGCTCATTTCTTAATCGAGATTGGCCAAAAATCCC 334
||||||||||||||| || ||||||||||||||||| |||||||||||||||||||| |
Sbjct 299 TTTTGGGGCCATGGACATCTATGCAAGCTCATTTCTTGATCGAGATTGGCCAAAAATCTC 358
Query 335 GGGTTCCGGTTGTTTCTTACTCTGCAACAAGCCCATTTCTTACTTCTCTTCGTAGTCCAT 394
||||||| |||||||| || |||||||||||||||| |||||||||||| || |||||||
Sbjct 359 GGGTTCCTGTTGTTTCCTATTCTGCAACAAGCCCATCTCTTACTTCTCTCCGCAGTCCAT 418
Query 395 ACTTCTTTCGTGCTACATACGAAGACTCCTTTCAAGTGTACACCATAAGAGCTATCATCA 454
||||||| || |||||||| || ||||||| ||||||| | | |||| |||||| ||||
Sbjct 419 ACTTCTTCCGAGCTACATATGAGGACTCCTCTCAAGTGCATGCTATAAAAGCTATTATCA 478
Query 455 AGTTGTTTGGTTGGAGGGAAGCCGTGCCTGTTTATATCGACAACAGC-TTTGGAGAAGGT 513
|||||||||| ||||| |||| ||||| ||||| |||||||||| | ||||||||||||
Sbjct 479 AGTTGTTTGGGTGGAGAGAAGTTGTGCCAGTTTACATCGACAACA-CTTTTGGAGAAGGT 537
Query 514 ATAATGCCTCGTCTCACCGATGCATTACAAGAGATTAATGTTCGAATACCTTACAGATCT 573
||||||||||||||||| ||| |||||||||| ||||||||||| |||||||| |||||
Sbjct 538 ATAATGCCTCGTCTCACTGATTCATTACAAGATATTAATGTTCGGATACCTTATAGATCC 597
Query 574 GTCATTGCGTC-CAATGCCACAGATCATGAAATCTCTGTGGAGCTTCTTAAGATGATG-A 631
|| | | | || ||||||||| ||||| || ||||||||||||||||||||||||||| |
Sbjct 598 GTTA-TCCCTCTCAATGCCACGGATCAAGATATCTCTGTGGAGCTTCTTAAGATGATGAA 656
Query 632 CTATGCCCACAAGAGTGTTCATTGTACACATGTACTCTTCTCTTGCCTCAAGAGTCTTCA 691
| ||||||||||||||||||||||| ||||||| ||||||||| ||||||| ||||||||
Sbjct 657 C-ATGCCCACAAGAGTGTTCATTGTCCACATGTCCTCTTCTCTAGCCTCAACAGTCTTCA 715
Query 692 TTAAAGCTAGGGAAATTGGTTTGATGAAACCAGGATATGTCTGGATCCTTACCAATGGCG 751
||||||| | ||| ||||||||||||||||||||||||||||||||||||| ||||| |
Sbjct 716 TTAAAGCAAAGGAGCTTGGTTTGATGAAACCAGGATATGTCTGGATCCTTACAAATGGAG 775
Query 752 TAACCGATGAATTGA-ATTGGATAAGTGAGACAGGTATTGAGGCTATGGAGGGGGTATTG 810
| | |||| || | | ||||| |||||| |||||||||||||||||||||||||||
Sbjct 776 TTATGGATGGCTT-ACGGTCGATAAATGAGACGGGTATTGAGGCTATGGAGGGGGTATTG 834
Query 811 GGTGTTAAAACTTATATT-CAGAAATCCAGAGAACTTGAAAATTTTAGATCTCGATGGAG 869
||| |||||||||||||| || ||||||| ||| || |||| |||||||| || ||||
Sbjct 835 GGTATTAAAACTTATATTCCA-AAATCCAAAGATCTAGAAACGTTTAGATCACGTTGGAA 893
Query 870 GAAGAAATTTTCACGGATGGAGCTGAATGTCTATGGATTGTGGGCTTATGATGCTATCAC 929
|| || ||| ||| ||||||||||||||||||||||||||||||||||||||| | |||
Sbjct 894 GAGGAGATTCCCACAGATGGAGCTGAATGTCTATGGATTGTGGGCTTATGATGCGACCAC 953
Query 930 CGCACTGGCGATAGCCATTGAAGAAGCTGGAACAAATAACTTGACTTTCAGTAATGTGGA 989
|||||||| || ||||||||||| || |||| ||||||| |||||||||||||||||||
Sbjct 954 TGCACTGGCCATGGCCATTGAAGATGCGGGAATAAATAACATGACTTTCAGTAATGTGGA 1013
Query 990 T-CTTGGAAGGAATGTTTCTGAACTTGAAGTTCTTGCTTTATCTCAATATGGTCCAAAGC 1048
| | |||| |||||||||||||||||| | ||||| |||||| |||| |||||||||||
Sbjct 1014 TACGGGGAA-GAATGTTTCTGAACTTGATGGTCTTGGTTTATCACAATTTGGTCCAAAGC 1072
Query 1049 TTCTCCAGACACTCTCAACAATTCAGTTCAAAGGACTTGCAGGAGATTTCCGTTTTATCA 1108
|||||||||| |||||||| ||||||||||||| ||||||||||| |||| |||| ||
Sbjct 1073 TTCTCCAGACGGTCTCAACAGTTCAGTTCAAAGGTCTTGCAGGAGACTTCCATTTTGTC- 1131
Query 1109 AG-GGACAACTGCAACCATCGGTGTTTGAGATTGTTAATATGATTGGAAATGGAGAAAGG 1167
|| || ||||||||||||||||||||||||||||| ||||||||||||| |||||||||
Sbjct 1132 AGCGGGCAACTGCAACCATCGGTGTTTGAGATTGTCAATATGATTGGAACCGGAGAAAGG 1191
Query 1168 TCGATAGGATTCTGGACCG-AGGAAAATGGTCTTGTAAAGAAACTAAACC-AGCAA-C-C 1223
|| |||||||| ||||| | ||| |||||||||||| |||||||| ||| || || | |
Sbjct 1192 TCAATAGGATTTTGGACGGAAGG-AAATGGTCTTGTGAAGAAACTTGACCAAG-AACCTC 1249
Query 1224 GAAGAGCATGAACG--CTTTATCTACTTGGAAAGACCATCTTAAAAACATTCTATGGCCT 1281
| | ||||| | | ||||||| |||||| ||| ||||||||| | || ||||||||
Sbjct 1250 G-A-AGCAT--AGGTACTTTATCCACTTGGCCAGATCATCTTAAACATATAATATGGCCT 1305
Query 1282 GGAGAGGCTGATTCTGTTCCCAAAGGATGGGAGATGCCGACAAATGGGAAGAAGTTGCGC 1341
|||||||| | ||||||||| |||||||||||||| ||||| ||||||||||||||||||
Sbjct 1306 GGAGAGGCCGTTTCTGTTCCGAAAGGATGGGAGATCCCGACTAATGGGAAGAAGTTGCGC 1365
Query 1342 ATTGGGGTTCCAAAGAGAACCGGTTACACCGATCTTGTGAAAGTCACAAGGGATCCTATC 1401
||||| ||||| ||||||| ||||| ||| ||||| ||||| ||||||||||||||||||
Sbjct 1366 ATTGGAGTTCCCAAGAGAATCGGTTTCACTGATCTCGTGAAGGTCACAAGGGATCCTATC 1425
Query 1402 ACCAATTCACCAGTAGTCACAGGTTTCTGCATTGATTTCTTTGAGGCTGTGATTCGAGCA 1461
||||||||| | ||||||| |||||| ||||| ||||| |||||||||||||||| ||||
Sbjct 1426 ACCAATTCAACGGTAGTCAAAGGTTTTTGCATAGATTTTTTTGAGGCTGTGATTCAAGCA 1485
Query 1462 ATGCCTTATGACGTTTCGTATGAGTTCATTCCGTTCGAGAAACCCAATGGTAAACCAGCC 1521
|||||||||||||| || ||||||||| |||| || || |||||||| ||| ||||||||
Sbjct 1486 ATGCCTTATGACGTCTCTTATGAGTTCTTTCCTTTTGAAAAACCCAACGGTGAACCAGCC 1545
Query 1522 GGTAATTATGATGATTTGGTCCACCAAGTGTACCTCGGG-AGATATGATGCTGTTGTGGG 1580
|||||| | | || |||||||||||||||||||||||| | || |||||| || || ||
Sbjct 1546 GGTAATCACAACGACTTGGTCCACCAAGTGTACCTCGGGCA-ATTTGATGCCGTGGTCGG 1604
Query 1581 AGATACAACCATACTGGCGAACAGGTCCGCTTACGTCGACTTCACATTCCCATTCTTTAA 1640
|||||||||||||||||||||||||||| ||| || ||||| ||| |||||||| | ||
Sbjct 1605 AGATACAACCATACTGGCGAACAGGTCCTCTTTTGTTGACTTTACACTCCCATTCATGAA 1664
Query 1641 ATCAGGCGTAGGATTAATCGCCCCCATT-AAAGACCAAGTGAAACGAGACAGTTTCA-CT 1698
|||||| || ||||| |||| |||||| ||||| |||||||| |||||| |||| |
Sbjct 1665 ATCAGGTGTGGGATTGATCG-TCCCATTGAAAGATGAAGTGAAAAGAGACAAATTCAGC- 1722
Query 1699 TTCTTGAAACCTTTGTC-ATGGAATCTATGGTTTACTTCCTTCGTCTTCTTCTTCCTTGT 1757
||||||||||||||||| || ||| |||||||| || |||| ||||| |||||||| ||
Sbjct 1723 TTCTTGAAACCTTTGTCAATCGAA-CTATGGTTGACAACCTTAGTCTTTTTCTTCCTAGT 1781
Query 1758 TGGAATTACTGTTTGGGCTCTTGAACATAGGGTTAACCCGGACTTCCGTGGACCTGCTAA 1817
|||||||| ||| ||| |||||||||||||||| || |||||||||||||||| |||||
Sbjct 1782 TGGAATTAGTGTATGGACTCTTGAACATAGGGTCAATTCGGACTTCCGTGGACCAGCTAA 1841
Query 1818 TTACCAAGCTAGTACTATCCTCTGGTTTGCCTTCTCTACCATGGTTTTTGCTCCAAGAGA 1877
||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1842 TTACCAAGCTAGTACCATCTTCTGGTTTGCCTTCTCTACCATGGTTTTTGCTCCAAGAGA 1901
Query 1878 AAGAGTGTTTAGCTTCGGGGCTAGGTTCCTGGTTATCGCATGGTACTTCGTTGTTCTCGT 1937
||||||| ||||||||||||| |||| ||| ||| || ||||||||||||| |||||||
Sbjct 1902 AAGAGTGCTTAGCTTCGGGGCAAGGTCCCTTGTTGTCACATGGTACTTCGTCCTTCTCGT 1961
Query 1938 GTTGACTCAGAGTTATACAGCCAGTTTGGCATCGCTTTTGACATCACAACAACTTCATCC 1997
||| ||||||||||| |||||||||||||| ||||||||||||||||||||||| ||||
Sbjct 1962 GTTAACTCAGAGTTACACAGCCAGTTTGGCGTCGCTTTTGACATCACAACAACTAAATCC 2021
Query 1998 AACCATAACCAGCATGAGTAGCTTGCTTGAGAGAGGAGAAACAGTGGGTTATCAGAGAAC 2057
|||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||
Sbjct 2022 AACCATAACCAGCATGAGTAGCTTGCTTCATAGAGGAGAAACAGTGGGTTATCAGAGAAC 2081
Query 2058 ATCCTTCATTCTTGGAAAGCTTAAAGAAACAGGTTTCTCACAATCTAGCCTTGTTCCCTT 2117
||||||||| |||||||||||||| |||||||||||| |||||||||||||||| |||||
Sbjct 2082 ATCCTTCATCCTTGGAAAGCTTAACGAAACAGGTTTCCCACAATCTAGCCTTGTGCCCTT 2141
Query 2118 TGACACCTCTGAAGAATGCAACGAGCTTTTGAGGAAAGGATCAGAAAAA-GGCGGTGTGT 2176
||| ||| | ||||||||| | |||||| ||| |||||| || ||||| || ||||||
Sbjct 2142 TGATACCGCAGAAGAATGCGATGAGCTTCTGAAAAAAGGACCA-AAAAATGGTGGTGTGG 2200
Query 2177 CTGCAGCTTTCTTGGAAATACCTTACTTGAGACTCTTCCTTGGACAATATTGCAACACTT 2236
||||||||||||||| || ||||||| |||||||||| ||||||||||||||||||||||
Sbjct 2201 CTGCAGCTTTCTTGGGAACACCTTACGTGAGACTCTTTCTTGGACAATATTGCAACACTT 2260
Query 2237 ATAAAATGGTTGAAGAACCCTTCAATATCGATGGATTTGGCTTCGTTTTTCCGATCGGAT 2296
|||||||||||||||||||||||||| | |||||||| ||||| || ||||| |||||||
Sbjct 2261 ATAAAATGGTTGAAGAACCCTTCAATGTTGATGGATTCGGCTTTGTGTTTCCAATCGGAT 2320
Query 2297 CACCTATGGTGGCCGATGTTTCAAGGGCTATCTTAAAAGTAGCAGAGTCACCAAAGGC-G 2355
||||| |||||||||||||||||||||| |||||||||||||||||||| |||||||| |
Sbjct 2321 CACCTCTGGTGGCCGATGTTTCAAGGGCCATCTTAAAAGTAGCAGAGTCTCCAAAGGCAG 2380
Query 2356 ATGGAGCTTGAGCGCGCATGGTTCAAGAAGAAAGAAGAACGTTGTCCAGACCCAGTCACT 2415
||||||| |||| ||| |||||||||||||||||| || ||||||| || ||||| ||
Sbjct 2381 -TGGAGCTCGAGCACGCTTGGTTCAAGAAGAAAGAACAAAGTTGTCCTGATCCAGTTACC 2439
Query 2416 AATCCAGATCCAAATCCATCTTTTACCTCTCGGCAGCTCGGTGTAGACAGTTTCTGGCTT 2475
||||||||| |||||||| || ||||| || |||||||| |||| |||||||||| ||
Sbjct 2440 AATCCAGATTCAAATCCAACTGTTACCGCTATACAGCTCGGCGTAGGCAGTTTCTGGTTT 2499
Query 2476 CTATTTCTTGTTGTATTTGTTGTGTGCATTCTAACACTCGGAAAATTCACATTATGTTTC 2535
| ||||||||||| |||||||| ||| ||||| ||||||||||||||||||| ||||||
Sbjct 2500 TTGTTTCTTGTTGTGTTTGTTGTCTGCGTTCTAGCACTCGGAAAATTCACATTCTGTTTC 2559
Query 2536 CTTTGGAAGAGCAAA-GGGAATGATTTGTGGGAAGAGTTTC-AACAACCAGACAATGATT 2593
|| ||||||| |||| ||||| ||||||||| ||||||||| || ||| ||||| || |
Sbjct 2560 CTATGGAAGA-CAAAAGGGAAAGATTTGTGGAAAGAGTTTCTAA-AACGAGACACCGACT 2617
Query 2594 CCTACATCAACAAGGTAGAGAAATG 2618
| ||||||||| | ||||||||||
Sbjct 2618 CGTACATCAACGACATAGAGAAATG 2642
> AT2G24710.1 | Symbols: ATGLR2.3, GLR2.3 | glutamate receptor
2.3 | chr2:10516880-10520549 REVERSE LENGTH=2688
Length=2688
Score = 2468 bits (1336), Expect = 0.0
Identities = 2184/2580 (85%), Gaps = 111/2580 (4%)
Strand=Plus/Plus
Query 21 CTTGCTCTTCTTCTTCTCTGTGTTCTTTGTTGTACTCAGTAGAGGACAGAACaa---aaa 77
||||||| ||||||||| | || |||| | | ||| |||||||||||||| ||
Sbjct 30 CTTGCTCGTCTTCTTCT-TCTG---TTTG--GAATTCAACAGAGGACAGAACAACGGCAA 83
Query 78 aaCAGAAGTCAATGTGGGTATTGTAACAGATGTCGGGATGA--T-GCATTCAG-ACATTG 133
||| |||| |||| ||| |||||||||||||| ||| | | || || | | |||
Sbjct 84 AACCCTAGTCGATGTCGGTGTTGTAACAGATGTC--GAT-ACTTCACACTC-GAAGGTTG 139
Query 134 AAATGCTCTGCATCAACATGTCTCTT-GCAGATTTCTACTCTTCTC-GTCCCCATTTTCG 191
||||||||||||||||||||| || | |||||||||||||| | |||||| ||| |
Sbjct 140 TCATGCTCTGCATCAACATGTCTATTAG-TGATTTCTACTCTTC-CAATCCCCAGTTT-G 196
Query 192 -GACAAGGATTGTCGTCAATGTCGGCGACTCAAAAAAG-GACGTTGTAGGT----C--TT 243
||||||| |||| ||||| || || ||||| ||||| |||||||||||| | ||
Sbjct 197 AGACAAGGCTTGTTGTCAACGTAGGTGACTC-CAAAAGTGACGTTGTAGGTGCCGCGATT 255
Query 244 G-AG--C-TG--C---TCAAGAACAATGAAGTGAAAGCGATTTTGGGGCCATGGAGTTCA 294
| || | || | | |||||||| ||||||| || |||||||||||||||| ||
Sbjct 256 GCAGCTCTTGACCTGATAAAGAACAAACAAGTGAAGGCTATTTTGGGGCCATGGACATCT 315
Query 295 ATGCAAGCTCATTTCTTAATCGAGATTGGCCAAAAATCCCGGGTTCCGGTTGTTTCTTAC 354
||||||||||| ||| | ||||||||||||||||| ||||||||||| ||||||| ||
Sbjct 316 ATGCAAGCTCACTTCCTGATCGAGATTGGCCAAAAGTCCCGGGTTCCTATTGTTTCCTAT 375
Query 355 TCTGCAACAAGCCCATTTCTTACTTCTCTTCGTAGTCCATACTTCTTTCGTGCTACATAC 414
||||||||||||||| |||||||||| |||||||||||||||||||| |||||||| |||
Sbjct 376 TCTGCAACAAGCCCAATTCTTACTTCCCTTCGTAGTCCATACTTCTTACGTGCTACGTAC 435
Query 415 GAAGACTCCTTTCAAGTGTAC-ACC-ATAAGAGCTATCATCAAGTTGTTTGGTTGGAGGG 472
||||||||||||||||| | | ||| |||| ||| |||||||| ||||| || ||||| |
Sbjct 436 GAAGACTCCTTTCAAGT-T-CAACCAATAAAAGCCATCATCAAATTGTTCGGATGGAGAG 493
Query 473 AAGCCGTGCCTGTTTATATCGACAACAGCTTTGGAGAAGGTATAATGCCTCGTCTCACCG 532
||| ||||| ||||| || ||||||| |||||| |||||||||||||||||||| ||||
Sbjct 494 AAGTTGTGCCAGTTTACATTGACAACACCTTTGGTGAAGGTATAATGCCTCGTCTTACCG 553
Query 533 ATGCATTACAAGAGATTAATGTTCGAATACCTTACAGATCTGTCATTGCGT-CCAATGCC 591
|||| |||||||| |||||||| || |||||||| ||||| || || || | |||||||
Sbjct 554 ATGCTTTACAAGATATTAATGTCCGGATACCTTATAGATCCGTTATCGC-TATCAATGCC 612
Query 592 ACAGATCATGAAATCTCTGTGGAGCTTCTTAAGATGATG-ACTATGCCCACAAGAGTGTT 650
|| |||||||||||||| ||||||||||||||||||||| || |||||||||||||||||
Sbjct 613 ACTGATCATGAAATCTCCGTGGAGCTTCTTAAGATGATGAAC-ATGCCCACAAGAGTGTT 671
Query 651 CATTGTACACATGTACTCTTCTCTTGCCTCAAGAGTCTTCATTAAAGCTAGGGAAATTGG 710
| |||| |||||||||| | ||||||||||||| ||||||||||||| | || ||||
Sbjct 672 CCTTGTCCACATGTACTATGATCTTGCCTCAAGATTCTTCATTAAAGCAAAAGAGCTTGG 731
Query 711 TTTGATGAAACCAGGATATGTCTGGATCCTTACCAATGGCGTAACCGATGAATTGAA-TT 769
||||||| ||||||||||||||||||||||||||||||| || | |||||| || || ||
Sbjct 732 TTTGATGGAACCAGGATATGTCTGGATCCTTACCAATGGAGTTATCGATGACTT-AAGTT 790
Query 770 GGATAAGTGAGACAGG-TATTGAGGCTATGGAGGGGGTATTGGGTGTTAAAACTTATATT 828
||||| |||||| || | |||||||||||||||||||||||||| ||||||||||||||
Sbjct 791 TGATAAATGAGAC-GGCTGTTGAGGCTATGGAGGGGGTATTGGGTATTAAAACTTATATT 849
Query 829 -CAGAAATCCAGAGAACTTGAAAATTTTAGATCTCGATGGAGGAAG-AAATTTTCACGGA 886
|| |||||| ||| ||||| || |||||||||||||||| |||| ||| |||||
Sbjct 850 CCA-AAATCCCCAGATCTTGAGAAGTTTAGATCTCGATGGA-GAAGTTTATTCCCACGGG 907
Query 887 TGGAGCTGAATGTCTATGGAT-TGTGGGCTTATGATGCTATCACCGCACTGGCGATAGCC 945
||||||||| ||||||||| | |||||||||||||||||| ||||||||| ||| |||||
Sbjct 908 TGGAGCTGAGTGTCTATGG-TCTGTGGGCTTATGATGCTACCACCGCACTAGCGGTAGCC 966
Query 946 ATTGAAGAAGCTGGAACAAATAACTTGACTTTCAGT-AA-T-GTGGAT-CTTGGAAGGAA 1001
|||||||||||||||||||||||| ||||||||||| || | |||||| | || |||||
Sbjct 967 ATTGAAGAAGCTGGAACAAATAACATGACTTTCAGTAAAGTGGTGGATAC-AGGGAGGAA 1025
Query 1002 TGTTTCTGAACTTGAAGTTCTTGCTTTATCTCAATAT-GGTCCAAAGCTTCTCCAGACAC 1060
||||||||||||||||| ||||| ||||||||| | | ||||||||||||||||| ||||
Sbjct 1026 TGTTTCTGAACTTGAAGCTCTTGGTTTATCTCAGT-TCGGTCCAAAGCTTCTCCAAACAC 1084
Query 1061 TCTCAACAATTCAGTTCAAAGGACTTGCAGGAGA-TTTCCGTTTTAT-CAAGGGACAACT 1118
||| |||| ||||||||| ||||||||||||||| ||| |||||| | | ||| |||||
Sbjct 1085 TCTTAACAGTTCAGTTCAGAGGACTTGCAGGAGAGTTT-CGTTTTTTCCGCGGG-CAACT 1142
Query 1119 GCAACCATCGGTGTTTGAGATTGTTAATATGATTGGAA-A-TGGAGAAAGGTCGATAGGA 1176
|||||||||||||||||||||||| ||||| | | || | ||||||| || ||||||
Sbjct 1143 GCAACCATCGGTGTTTGAGATTGTCAATAT-AAT-CAATACCGGAGAAAAATCAATAGGA 1200
Query 1177 TTCTGGACCGAGGAAAATGGTCTTGTAAAGAAACTAAACCAGCAACCGAAG-AGCATGAA 1235
|| |||| |||| |||||||||||| |||||||| | |||||| | ||| ||||| ||
Sbjct 1201 TTTTGGAAGGAGGGAAATGGTCTTGTGAAGAAACTTGATCAGCAAGC-AAGTAGCAT-AA 1258
Query 1236 -CGCTTTATCTACTTGGAAAGACCATCTTAAAAACATTCTATGGCCTGGAGAGGCTGATT 1294
||||||||||||||||||||| ||||||||| ||||| |||||||||||||||| ||||
Sbjct 1259 GCGCTTTATCTACTTGGAAAGATCATCTTAAACACATTGTATGGCCTGGAGAGGCGGATT 1318
Query 1295 CTGTTCCCAAAGGATGGGAGATGCCGACAAATGGGAAGAAGTTGCGCATTGGGGTT-CCA 1353
||||||| ||||||||| |||| ||||| || |||||||||||||| ||||| ||| |||
Sbjct 1319 CTGTTCCGAAAGGATGGCAGATCCCGACTAAGGGGAAGAAGTTGCGTATTGGAGTTCCCA 1378
Query 1354 AAGAGAACCGGTTACACCGATCTTGTGAAAGTCACAAGGGATCCTATCACCAATTCACCA 1413
|| |||||||| ||||| ||||||||||||||||||||||||||||| ||||||||| |
Sbjct 1379 AA-AGAACCGGCTACACTGATCTTGTGAAAGTCACAAGGGATCCTATTACCAATTCAACT 1437
Query 1414 GTAGTCACAGGTTTCTGCATTGATTTCTTTGAGGCTGTGATTCGAGCAA-TGCCTTATGA 1472
|||||||||||||| ||||| ||||||||||||||||||||||||| || ||||||||||
Sbjct 1438 GTAGTCACAGGTTTTTGCATAGATTTCTTTGAGGCTGTGATTCGAG-AACTGCCTTATGA 1496
Query 1473 CGTTTCGTATGAGTTCATTCCGTTCGAGAAACCCAATGGTAAACCAGCCGGTAATTATGA 1532
||| || ||||||||||| || ||||| |||||| | || ||| ||||||||||||| |
Sbjct 1497 CGTCTCATATGAGTTCATACCTTTCGAAAAACCCGACGGAAAAACAGCCGGTAATTACAA 1556
Query 1533 TGATTTGGTCCACCAAGTGTACCTCGGGAGATATGATGCTGTTGTGGGAGATACAACCAT 1592
|| |||||| |||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1557 CGACTTGGTCTACCAAGTGTACCTCGGGAGATATGATGCGGTTGTGGGAGATACAACCAT 1616
Query 1593 ACTGGCGAACAGGTCCGCTTACGTCGACTTCACATTCCCATTCT-TTAAATCAGGCGTAG 1651
| ||| ||||||||| ||||||||||||||||||||||||| | |||||||||| || |
Sbjct 1617 ATTGGTGAACAGGTCTTCTTACGTCGACTTCACATTCCCATT-TATTAAATCAGGTGTCG 1675
Query 1652 GATTAATCGCCCCCATTAAAGACCAAGTGAAACGAGACAGT-T-TCAC-TTTCTTGAAAC 1708
|||| |||| || | ||||| ||| ||| |||| | | | | || |||| ||||||
Sbjct 1676 GATTGATCGTTGAAATGACAGACCCAGT-AAA-GAGAGACTATAT-ACTTTTCATGAAAC 1732
Query 1709 CTTTGTCATGGAATCTATGGTTTACTTCCTTCGTCTTC-TTCTTCCTTGTTGGAAT-TAC 1766
||||||||||||| |||||||| |||||||| || || ||||||||||| || | |||
Sbjct 1733 CTTTGTCATGGAAACTATGGTTGACTTCCTTTATC-TCTTTCTTCCTTGTCGG-TTGTAC 1790
Query 1767 TGTTTGGGCTCTTGAACAT-AGGGTTAACCCGGACTTCCGTGGACCTG-CTA-ATTACCA 1823
||| |||| ||| ||| || || | ||| |||||||| ||||||| | ||| ||| |||
Sbjct 1791 TGTATGGGTTCTCGAATATAAGCG-TAATCCGGACTTTAGTGGACC-GCCTAGATT-CCA 1847
Query 1824 AGCTAGTACTATCCT-CTGGTTTGCCTTCTCTACCATGGTTTTTGCTCCAAGAGAAAGAG 1882
||||||||| || || |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1848 AGCTAGTACCAT-CTGTTGGTTTGCCTTCTCTACCATGGTTTTTGCTCCAAGAGAAAGAG 1906
Query 1883 TGTTTAGCTTCGGGGCTAGGTTCCTGGTTATCGCATGGTACTT-CGTTGTTCTCGTGTTG 1941
| |||||||| |||| ||| ||||||||||||||||||||| | | |||||||||||
Sbjct 1907 TATTTAGCTTTTGGGCGAGGGCCCTGGTTATCGCATGGTACTTTC-TCGTTCTCGTGTTA 1965
Query 1942 ACTCAGAGTTATACAGCCAGTTTGGCATCGCTTTTGACATCACA-ACAACTTCA-TCCAA 1999
|| |||||||| ||||| |||||||||||||||||||||||||| | || || | |||||
Sbjct 1966 ACCCAGAGTTACACAGCGAGTTTGGCATCGCTTTTGACATCACAGA-AA-TTAAATCCAA 2023
Query 2000 CCATAACCAGCATGAGTAGCTTGCTTGAGAGAGGAGAAACAGTGGGTTATCAGAGAACAT 2059
| ||||||||||||||||| |||||||| | |||||||||||||||||||||| ||||||
Sbjct 2024 CAATAACCAGCATGAGTAGTTTGCTTGAAAAAGGAGAAACAGTGGGTTATCAGCGAACAT 2083
Query 2060 CCTTCATTCTTGGAAAGCTTAAAGAAACAGGTTTCTCACAATCTAGCCTTGTTCCCTTTG 2119
||||||| ||||||||||||||||||| ||||||| | |||||||||||||| |||||||
Sbjct 2084 CCTTCATCCTTGGAAAGCTTAAAGAAAGAGGTTTCCCGCAATCTAGCCTTGTGCCCTTTG 2143
Query 2120 ACACCT-CTGAAGAATGCAACGAGCTTTTGAGGAAAGGATCAGAAAAAGGCGGTGTGTCT 2178
| || | | |||||||| | |||||| | || |||||| || ||||||| ||||| |||
Sbjct 2144 ATAC-TGCAGAAGAATGTGATGAGCTTCTAAGTAAAGGACCAAAAAAAGGTGGTGTCTCT 2202
Query 2179 GCAGCTTTCTTGGAAATACCTTACTTGAGACTCTTCCTTGGACAATATTGCAACACTTAT 2238
| ||||||||||||||||||||||||||||||||| |||||||| | ||||||||| ||
Sbjct 2203 GGAGCTTTCTTGGAAATACCTTACTTGAGACTCTTTCTTGGACAGTTTTGCAACACATAC 2262
Query 2239 AAAATGGTTGAAGAACCCTTCAATATCGATGGATTTGGCTTCGTTTTTCCGATCGGATCA 2298
|||||||||||||||||||||||| | |||||||| ||||| |||||||| |||||||||
Sbjct 2263 AAAATGGTTGAAGAACCCTTCAATGTTGATGGATTCGGCTTTGTTTTTCCAATCGGATCA 2322
Query 2299 CCTATGGTGGCCGATGTTTCAAGGGCTATCTTAAAAGTAGCAGAGTCACCAAAGGCGATG 2358
||| | |||||||||||||||||||| |||||||||||||||||||| |||||||| |||
Sbjct 2323 CCTCTAGTGGCCGATGTTTCAAGGGCCATCTTAAAAGTAGCAGAGTCTCCAAAGGCAATG 2382
Query 2359 GAGCTTGAGCGCGCATGGTTCAAGAAGAAAGAAGAACGTTGTCCAGACCCAGTCACTAAT 2418
||||| ||||| ||||||||||||||||||||| || | ||||| || ||| | ||||||
Sbjct 2383 GAGCTCGAGCGTGCATGGTTCAAGAAGAAAGAACAAAGCTGTCCTGATCCAATTACTAAT 2442
Query 2419 CCAGATCCAAATCCATCTTTTACCTCTCGGCAGCTCGGTGTAGACAGTTTCTGGCTTCTA 2478
|||||||||||||| ||||| |||||| ||||||| | |||||||||||| | ||||
Sbjct 2443 CCAGATCCAAATCCCTCTTTCACCTCTAGGCAGCTTGACATAGACAGTTTCTTGTTTCTG 2502
Query 2479 TTTCTTGTTGTATTTGTTGTGTGCATTCTAACACTCGGAAAATTCACATTAT-GTTTCCT 2537
||| ||| || || ||||||| || | |||||||||| ||||||| || |||||||
Sbjct 2503 TTTGTTGGCGTGTTACTTGTGTGTGTTATGGCACTCGGAAATTTCACAT-ATTGTTTCCT 2561
> AT2G24750.1 | Symbols: | pseudogene, similar to Avr9/Cf-9 rapidly
elicited protein 141, similar to GB:AAB61068; blastp match
of 43% identity and 5.0e-152 P-value to GP|30013669|gb|AAP03877.1||AY220478
Avr9/Cf-9 rapidly elicited protein 141
{Nicotiana tabacum} | chr2:10539001-10545985 FORWARD LENGTH=6985
Length=6985
Score = 1221 bits (661), Expect = 0.0
Identities = 1119/1339 (84%), Gaps = 36/1339 (3%)
Strand=Plus/Plus
Query 240 TCTTGAGCTGCTCAAGAACAATG-AAGTGAAAGCGATTTTGGGGCCATGGAGTTCAATGC 298
|||| ||||| | |||||||| | | ||| ||||||||||||||| |||| || ||||
Sbjct 4007 TCTTAAGCTGATAAAGAACAA-GCACGTGGTAGCGATTTTGGGGCCTTGGACATCCATGC 4065
Query 299 AAGCTCATTTCT-TAATCGAGATTGGCCAAAAATCCCGGGTTCCGGTTGTTTCTTACTCT 357
|||||||||| | | || || ||||| |||||||| ||||| ||| ||||||||||||||
Sbjct 4066 AAGCTCATTT-TATGATTGATATTGGACAAAAATCTCGGGTGCCGATTGTTTCTTACTCT 4124
Query 358 GCAACAAGCCCATTTCTTACTTCTCTTCGTAGTCCATACTTCTTT-CGTGCTACATACGA 416
|||||||| || |||||||||||||| || ||||||||||| ||| ||||||||||| ||
Sbjct 4125 GCAACAAGTCCGTTTCTTACTTCTCTACGCAGTCCATACTT-TTTCCGTGCTACATATGA 4183
Query 417 AGACTCCTTTCAAGTGTACACCATAAGAGCTATCATCAAGTTGTTTGGTTGGAGGGAAGC 476
|||||||||||||| | |||||| | ||||||||||||||||||| ||||| ||||
Sbjct 4184 GGACTCCTTTCAAGTAAAGGCCATAAAATCTATCATCAAGTTGTTTGGGTGGAGAGAAGT 4243
Query 477 CGTGCCTGTTTATATCGACAACAGC-TTTGGAGAAGGTATAATGCCTCGTCTCACCGATG 535
||||| |||||| ||||||||| | |||||||||||||| ||||| | ||| || ||||
Sbjct 4244 CGTGCTTGTTTACATCGACAAC-TCATTTGGAGAAGGTATTATGCCACATCTTACTGATG 4302
Query 536 CATTACAAGAGATTAATGTTCGAATACCTTACAGATCTGTCAT-TGCGTC-CAATGCCAC 593
|||||||||||||||| ||||||||| | ||||||| ||| || | | || |||||||||
Sbjct 4303 CATTACAAGAGATTAACGTTCGAATATCATACAGATATGTTATCT-C-TCTCAATGCCAC 4360
Query 594 AGATCATGAAATCTCTGTGGAGC-TTCTTAAGATGATGACTATGCCCACAAGAGTGTTCA 652
||| ||||||||||| | |||| ||| |||||||||||| |||||||||||||| || |
Sbjct 4361 TGATTATGAAATCTCTCTAGAGCTTTC-TAAGATGATGACCATGCCCACAAGAGTTTTTA 4419
Query 653 TTGTACACATGTACTCTTCTCTTGCCTCAAGAGTCTTCATTAAAGCTAGGGAA-ATTGGT 711
| || |||||| |||||||||||||||||||||||| | |||| || ||| ||||||
Sbjct 4420 TCGTCCACATGCCCTCTTCTCTTGCCTCAAGAGTCTTTACTAAAATTA-AGAAGATTGGT 4478
Query 712 TTGATGAAACCAGGATATGTCTGGATCCTTACCAATGGCGTAACCGATGAATTGAA--TT 769
|||||||||||||||||||| ||||||||||||| ||| ||||||||||| || || ||
Sbjct 4479 TTGATGAAACCAGGATATGTTTGGATCCTTACCAGTGGAGTAACCGATGAGTT-AAGTTT 4537
Query 770 GGATAAG-TGAGACAGGTATTGAGGCTATGGAGGGGGTATTGGGTGTTAAAACTTATATT 828
|| | || |||| | ||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 4538 GG-T-AGATGAGGCGGGTATTGAGGCTATGGAAGGGGTATTGGGTGTTAAAACTTATATT 4595
Query 829 CAGAAATCCAGA-GAACTTGAAAATTTTAGATCTCGATGGAGGAAGAAATTTTCACGGAT 887
| |||||| | | || || ||||| |||||| || | ||||||||||| || || ||||
Sbjct 4596 CGGAAATCAA-ATGACCTCGAAAAGTTTAGAGCTTGTTGGAGGAAGAAGTTCCCAGGGAT 4654
Query 888 GGAGCTGAATGTCTATGGATTGTGGGCTTATGATGCTATCACCGCACTGGCGATAGCCAT 947
||| |||||||||||||||||||||||||||||||||| || |||| |||| ||||| ||
Sbjct 4655 GGACCTGAATGTCTATGGATTGTGGGCTTATGATGCTACCATCGCATTGGCAATAGCTAT 4714
Query 948 TGAAGAAGCTGGAACAAATAACTTGACTTTCAGTAATGTGGATCTTG-GAAGGAATGTTT 1006
|||||||||||||||| ||||| ||||||| ||||||||||| || ||| |||||| |
Sbjct 4715 TGAAGAAGCTGGAACAGATAACATGACTTTTAGTAATGTGGAG-TTCAGAAAGAATGTGT 4773
Query 1007 CTGAACTTGAAGTTCTTGCTTTATCTCAATATGGTCCAA-AGCTTCTCCAGACACTCTCA 1065
|||||||||||| ||||| ||| |||||||| ||||||| | |||| | |||||||| ||
Sbjct 4774 CTGAACTTGAAGCTCTTGGTTTTTCTCAATACGGTCCAAGA-CTTCGCAAGACACTCACA 4832
Query 1066 ACAATTCAGTTCAAAGGACTTGCAGGAGATTTCCGTTTTATC-AAGGGACAACTGCAACC 1124
||| ||| ||| ||||||||||||||||||||||||||| || |||| |||||| |||||
Sbjct 4833 ACAGTTCGGTTGAAAGGACTTGCAGGAGATTTCCGTTTTGTCGAAGG-ACAACTACAACC 4891
Query 1125 ATCGGTGTTTGAGATTGTTAATATGATTGGAAATGGAGAAAGGTCGATAGGATTCTGGAC 1184
|| |||||||||||| |||||| ||||||||| |||||||||| |||||||| |||||
Sbjct 4892 ATGGGTGTTTGAGATAGTTAATGTGATTGGAACCAGAGAAAGGTCAATAGGATTTTGGAC 4951
Query 1185 CGAGGAAAATGGTCTTGTAAAGAAACTAAACCA-GCAACCG-AAGAGCATGAACGCTTTA 1242
|| |||||||||||||| |||||| || |||| | | ||| || | || | || |||
Sbjct 4952 GGAAGAAAATGGTCTTGTGAAGAAATTAGACCAAG-AGCCGCAAAA-CACGGGTGCGTTA 5009
Query 1243 TCTACTTGGAAAGACCATCTTAAAAACATTCTATGGCCTGGAGAGGCTGATTCTGTTCCC 1302
|| |||||| |||| |||||||| | || ||||||| ||||||||| | | |||||||
Sbjct 5010 TCCACTTGGCAAGATCATCTTAAGCAGATAATATGGCCCGGAGAGGCTAACTATGTTCCC 5069
Query 1303 AAAGGATGGGAGATGCCGACAAATGGGAAGAAGTTGCGCATTGGGGTTCCAAAGAGAACC 1362
|||||||||||||| || || || ||||||| |||||||||||| |||||||| |||||
Sbjct 5070 AAAGGATGGGAGATCCCAACGAACGGGAAGAGGTTGCGCATTGGAGTTCCAAAAAGAACT 5129
Query 1363 GGTTACACCGATCTTGTGAAAGTCACAAGGGATCCTATCACCAATTCACCAGTAGTCACA 1422
|||||||||||||||||| | ||||| | |||||||| ||| ||||||| || ||||| |
Sbjct 5130 GGTTACACCGATCTTGTGGAGGTCACCATGGATCCTACCACGAATTCACAAGAAGTCAAA 5189
Query 1423 GGTTTCTGCATTGATTTCTTTGAGGCTGTGATTCGAGCAATGCCTTATGACGTTTCGTAT 1482
||||| ||||| | ||||||||| |||||||| | | ||||||||||||| | || |||
Sbjct 5190 GGTTTTTGCATAGCTTTCTTTGAAGCTGTGATCCAAAAAATGCCTTATGACATCTCCTAT 5249
Query 1483 GAGTTCATTCCGTTCGAGAA-ACCCAATGGTAAACCAGCCGGTAATTATGATGATTTGGT 1541
|| ||| |||| || || || | | | |||||||||||||| ||| | | ||| | |
Sbjct 5250 GATTTCTTTCCTTTTGA-AACATCGGACGGTAAACCAGCCGGAAATCACAACGATCTAAT 5308
Query 1542 CCACCAAGTGTACCTCGGG 1560
| ||||||| ||||| |||
Sbjct 5309 CTACCAAGTTTACCTTGGG 5327
Score = 172 bits (93), Expect = 1e-41
Identities = 277/362 (77%), Gaps = 28/362 (8%)
Strand=Plus/Plus
Query 2281 GTTTTTCCGATCGGATCACCTA-TGGTGGCCGATGTTTCAAGGGCTATCTTAAAAGTAGC 2339
|||||||| || || ||||| | |||| || ||||| |||||||| ||| ||||||| ||
Sbjct 6318 GTTTTTCCAATTGGGTCACC-ACTGGTTGCTGATGTATCAAGGGCCATCCTAAAAGTGGC 6376
Query 2340 AGAGTCA-CCAAAGGCGATGGAGCTTGAGCGCGCATGGTTCAAGAAGAAAGAAG-AACGT 2397
|| ||| ||||| || | ||| ||||| | | || ||||| || ||||| | ||| |
Sbjct 6377 GGAATCATCCAAA-GCAAAGGATCTTGATCTCAAATATTTCAAAAATAAAGATGAAAC-T 6434
Query 2398 TGTCCAGACCCAGTCACTAA-TCCAGATCCAAATCCATCTTTTA-CCTCTCGGCAGCTCG 2455
|| || || |||||||| || ||||||||||||||| || | | ||| |||||||||
Sbjct 6435 TGCCCGGATCCAGTCAC-AACTCCAGATCCAAATCCGTC-AACATCATCTAGGCAGCTCG 6492
Query 2456 GTGTAGACAGTTTCTGGCTTCTATTTCTTGTTGTATTTG-T--TGTGTGCATTCTAACAC 2512
|||||||||||||||||||| | ||| |||||| ||| | ||||| | || | || |
Sbjct 6493 GTGTAGACAGTTTCTGGCTTTTGTTTGTTGTTGC-TTTCATAATGTGT-CTTT-TCACCC 6549
Query 2513 TCGGAAAATTCACATTAT-GTTTCCTTTGGAAGAGCAA--AGG--GAATGATTTGTGGGA 2567
||||||||||||| || | ||| | || |||| || ||| | |||||||||| |
Sbjct 6550 TCGGAAAATTCACTTTCTTGTT-C-TTC--AAGAAAAATCAGGTTGC-TGATTTGTGGAA 6604
Query 2568 AGAGTTTCAACAACCAGACA-ATGATTCCTACATCAACAAGGTAGAGAAATGTCCGTGTT 2626
||||||||| | |||||| | ||||| |||||||| || || ||||||||| | ||||
Sbjct 6605 AGAGTTTCATCGACCAGATGGA-GATTCGTACATCAATAACGTGGAGAAATGTTCTTGTT 6663
Query 2627 CG 2628
||
Sbjct 6664 CG 6665
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 131537724546
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5