BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg899859 Length=606 Score E Sequences producing significant alignments: (Bits) Value AT5G43200.1 | Symbols: | Zinc finger, C3HC4 type (RING finger)... 158 8e-38 > AT5G43200.1 | Symbols: | Zinc finger, C3HC4 type (RING finger) family protein | chr5:17346141-17346764 REVERSE LENGTH=624 Length=624 Score = 158 bits (85), Expect = 8e-38 Identities = 267/349 (77%), Gaps = 36/349 (10%) Strand=Plus/Plus Query 66 TCGGTATGGCTTCTTAA--ACGAGTTAATAATCATTCGACCCAGAAAAGTCGAGGAA-TT 122 ||| || || ||||||| ||| | || |||||| || | |||| |||| |||||| || Sbjct 58 TCGTTA-GGGTTCTTAAGTACG-G-TAGTAATCAGTCAATACAGAGAAGTAGAGGAATTT 114 Query 123 CATCA-TAGACGACAACGATGATAGTGTCACGAGTCTCGGATCTTACCCGGAC--T-CTC 178 | ||| || || |||| ||| || |||||||||||||||||||||||||||| | || Sbjct 115 C-TCATTA-ACAACAAGGATAATTGTGTCACGAGTCTCGGATCTTACCCGGATGATTCTT 172 Query 179 CTCCTT--C-CGACCCACTAATCTATCTCAAATTCCAAAGCTTCGAACCAAACTACCTCC 235 || ||| | |||||||||||||| ||| | | ||| ||| ||| |||||||| || || Sbjct 173 CTACTTGTCACGACCCACTAATCTCTCTGACACTCCCAAGTTTCAAACCAAACGACGTCT 232 Query 236 ATCAACTTGTCCATACCCAACTCCACGACCATGTCTTGTCCAAACAAATATCT-G-ACCA 293 |||||| | |||| |||||||||||||| |||| ||||||| | ||||||||| | | | Sbjct 233 ATCAACATCTCCAGACCCAACTCCACGATCATGACTTGTCCGAGCAAATATCTTGTA--A 290 Query 294 GATTGTTGTTAAAGCACAAGA--G-CTAAGAAGTGATCAAAGT-TCTGATCACTTGCCAC 349 |||||| | || || ||| | | | || |||| |||||| | | | ||||||||| Sbjct 291 GATTGTCG--AA-GCCCAACAACGGCAAACAAGT---CAAAGTGT-T--T-ACTTGCCAC 340 Query 350 AACAACC-C-TT-ATTCATGGGAGTCTCCGTCAGATTTACACGCAAGGT 395 ||||||| | || |||||| ||||| |||| ||| |||| |||||| Sbjct 341 AACAACCACCTTTATTCATAATCGTCTCTGTCAAATTGACACACAAGGT 389 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 29186039407 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5