BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg899859

Length=606
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT5G43200.1 | Symbols:  | Zinc finger, C3HC4 type (RING finger)...   158    8e-38


> AT5G43200.1 | Symbols:  | Zinc finger, C3HC4 type (RING finger) 
family protein | chr5:17346141-17346764 REVERSE LENGTH=624
Length=624

 Score =  158 bits (85),  Expect = 8e-38
 Identities = 267/349 (77%), Gaps = 36/349 (10%)
 Strand=Plus/Plus

Query  66   TCGGTATGGCTTCTTAA--ACGAGTTAATAATCATTCGACCCAGAAAAGTCGAGGAA-TT  122
            ||| || || |||||||  ||| | || |||||| || |  |||| |||| |||||| ||
Sbjct  58   TCGTTA-GGGTTCTTAAGTACG-G-TAGTAATCAGTCAATACAGAGAAGTAGAGGAATTT  114

Query  123  CATCA-TAGACGACAACGATGATAGTGTCACGAGTCTCGGATCTTACCCGGAC--T-CTC  178
            | ||| || || |||| ||| || ||||||||||||||||||||||||||||   | || 
Sbjct  115  C-TCATTA-ACAACAAGGATAATTGTGTCACGAGTCTCGGATCTTACCCGGATGATTCTT  172

Query  179  CTCCTT--C-CGACCCACTAATCTATCTCAAATTCCAAAGCTTCGAACCAAACTACCTCC  235
            || |||  | |||||||||||||| ||| | | ||| ||| ||| |||||||| || || 
Sbjct  173  CTACTTGTCACGACCCACTAATCTCTCTGACACTCCCAAGTTTCAAACCAAACGACGTCT  232

Query  236  ATCAACTTGTCCATACCCAACTCCACGACCATGTCTTGTCCAAACAAATATCT-G-ACCA  293
            |||||| | |||| |||||||||||||| |||| ||||||| | ||||||||| | |  |
Sbjct  233  ATCAACATCTCCAGACCCAACTCCACGATCATGACTTGTCCGAGCAAATATCTTGTA--A  290

Query  294  GATTGTTGTTAAAGCACAAGA--G-CTAAGAAGTGATCAAAGT-TCTGATCACTTGCCAC  349
            |||||| |  || || ||| |  | | || ||||   |||||| | |  | |||||||||
Sbjct  291  GATTGTCG--AA-GCCCAACAACGGCAAACAAGT---CAAAGTGT-T--T-ACTTGCCAC  340

Query  350  AACAACC-C-TT-ATTCATGGGAGTCTCCGTCAGATTTACACGCAAGGT  395
            ||||||| | || ||||||    ||||| |||| ||| |||| ||||||
Sbjct  341  AACAACCACCTTTATTCATAATCGTCTCTGTCAAATTGACACACAAGGT  389



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 29186039407


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5