BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg899865
Length=975
Score E
Sequences producing significant alignments: (Bits) Value
AT5G63600.2 | Symbols: FLS5, ATFLS5 | flavonol synthase 5 | chr... 1347 0.0
AT5G63590.1 | Symbols: FLS3, ATFLS3 | flavonol synthase 3 | chr... 198 7e-50
> AT5G63600.2 | Symbols: FLS5, ATFLS5 | flavonol synthase 5 | chr5:25460684-25462458
REVERSE LENGTH=1567
Length=1567
Score = 1347 bits (729), Expect = 0.0
Identities = 904/987 (92%), Gaps = 18/987 (2%)
Strand=Plus/Plus
Query 1 ATGGAAGACGAGAGAGACCACGATACAAT-T-ACTTTGTCTCTCCCATCTTTGAGCAAGC 58
|||||||| |||||||||||| || | || | | | |||||||||||||||||||||||
Sbjct 189 ATGGAAGAAGAGAGAGACCACAATGC-ATCTGA-GTCGTCTCTCCCATCTTTGAGCAAGC 246
Query 59 AATTGGCGGGCACCACTCTTGGAGGAAGCGC-G--GACGTTCCCGTCGTTGATCTAAGCG 115
| |||| | || | ||||||||||||||||| | |||||||||||||||||||||||||
Sbjct 247 AGTTGGAGAGCTCGACTCTTGGAGGAAGCGCGGTCGACGTTCCCGTCGTTGATCTAAGCG 306
Query 116 TTTCTGATGAAGACTTCTTGGTGCATGAGGTGGTGAAAGCGAGTGAAGAGTGGGGAATAT 175
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||| | |
Sbjct 307 TTTCTGATGAAGACTTCTTGGTGCGTGAGGTGGTGAAAGCGAGTGAAGAGTGGGGAGTTT 366
Query 176 TTCAGGTGGTTAACCACGGGATTCCGGA-GGAGCTGATGCGGCAGCTGCAAGTGGTTGGG 234
|||||||||||||||| |||||||| | ||||||||||||||||||||| |||||||
Sbjct 367 TTCAGGTGGTTAACCATGGGATTCC-AACCGAGCTGATGCGGCAGCTGCAAATGGTTGGT 425
Query 235 AAACAGTTTTTCGACCTCCCCGAGGCGGAGAAGGAAATCGTGGCGAAAGATGG-AGACTT 293
| ||||||||||| ||||| || || || ||||||| |||||||||||| || ||||||
Sbjct 426 ACGCAGTTTTTCGAGCTCCCGGATGCTGAAAAGGAAACCGTGGCGAAAGA-GGAAGACTT 484
Query 294 CGAAGGATACAAGAGGAAGTATCTAGGAGGTATAAACAACTGGGACCAACATCTGTTTCA 353
|||||||||||||| ||| |||||||||||||||||||| |||||| ||||||| |||||
Sbjct 485 CGAAGGATACAAGAAGAATTATCTAGGAGGTATAAACAATTGGGACGAACATCTCTTTCA 544
Query 354 CAGACTCTCTCCACCCTCAATCATCAATTATAAATATTGGCCTAAGAATCCTCCTCAATA 413
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 545 CAGACTCTCTCCACCCTCAATTATCAATTATAAATATTGGCCTAAGAATCCTCCTCAATA 604
Query 414 CAGGGAGGTGACTGAGGAGTACACAAAGCATATGAAGAGGCTAACGGAGAAGATTCTTGG 473
||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 605 TAGGGAGGTGACGGAGGAGTATACAAAGCATATGAAGAGGCTAACGGAGAAGATTCTTGG 664
Query 474 TTGGTTATCAGAAGGATTAGGGTTACCGCGTGAGGCATTCACGCAAAGTATAGGTGGTGA 533
|||||||||||| ||||||||||||| ||||||| | |||||||||||||||||||||||
Sbjct 665 TTGGTTATCAGAGGGATTAGGGTTACAGCGTGAGACGTTCACGCAAAGTATAGGTGGTGA 724
Query 534 AACGGCAGAGTATGTTCTTAGGGTCAATTTCTATCCGCCAACTCAAGACT-CGGAATTAG 592
|||||||||||||| |||||||||||||||||||||||||||||||| | |||||||||
Sbjct 725 CACGGCAGAGTATGTGCTTAGGGTCAATTTCTATCCGCCAACTCAAGA-TACGGAATTAG 783
Query 593 TCATAGGAGCCGCGGCCCACAGCGATATGGGTGCAATCGCACTCATCCTCCCGAATGAGG 652
|||||||||||||||| ||||||||||||||||||||||||||| || |||| |||||||
Sbjct 784 TCATAGGAGCCGCGGCGCACAGCGATATGGGTGCAATCGCACTCCTCATCCCAAATGAGG 843
Query 653 TTCCTGGACTTCAAGCCTTCAAGGACGAACAATGGTTGGACCTTAACTATATCAACTCTG 712
|||||||||||||||||||||||||||||||||||||||||||| |||||||| |||| |
Sbjct 844 TTCCTGGACTTCAAGCCTTCAAGGACGAACAATGGTTGGACCTTGACTATATCGACTCCG 903
Query 713 CCGTGGTTGTTATCATCGGTGATCAACTCATG--A-GGATGACCAACGGGAGGTTCAAGA 769
|||||||||||||||| || |||||||||||| | ||||||||||||||||||| ||||
Sbjct 904 CCGTGGTTGTTATCATTGGCGATCAACTCATGGTATGGATGACCAACGGGAGGTTAAAGA 963
Query 770 ACGTGCTTCACAGAGCGAAGACGGATACGGA-AAGATTGAGGATATCTTGGCCTGTTTTT 828
|||| ||||||||||||||| | |||| ||| || ||||||||| |||||||||||||||
Sbjct 964 ACGTTCTTCACAGAGCGAAGTCTGATAAGGACAA-ATTGAGGATTTCTTGGCCTGTTTTT 1022
Query 829 GTGGCGCCTCGGGCTGATATGTCCGTCGGACCTTTGCCGGAGCTTACCGGAGACGAGAAT 888
|| || ||| |||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1023 GTTGCACCTAGGGCTGATATGTCCGTCGGACCTTTGCCGGAGTTTACCGGAGACGAGAAT 1082
Query 889 CCTCCTAAATTCGAGACTTTAATATATAATGAGTATATAAACCAGAAGATAAAAGGCTGG 948
||||| |||||||||||||||||||||||||| ||||| |||||||||||| |||||||
Sbjct 1083 CCTCCCAAATTCGAGACTTTAATATATAATGACTATATTGACCAGAAGATAAGAGGCTGG 1142
Query 949 GCGCTCGAAGATCTTCCTGTCTACTGA 975
|||||||||||||||||||||||||||
Sbjct 1143 GCGCTCGAAGATCTTCCTGTCTACTGA 1169
> AT5G63590.1 | Symbols: FLS3, ATFLS3 | flavonol synthase 3 | chr5:25456993-25458470
REVERSE LENGTH=1149
Length=1149
Score = 198 bits (107), Expect = 7e-50
Identities = 614/849 (72%), Gaps = 74/849 (9%)
Strand=Plus/Plus
Query 87 CGC-GGACGTTCCCGTCGTTGATCTAAGCGTTTCTGATGAAGACTTCTTGGT-GC-A-TG 142
||| |||| | ||||| |||||||||| | | |||||||| ||| || || | ||
Sbjct 75 CGCTGGACATCCCCGTTATTGATCTAAGTAATCCCGATGAAGA--GCTT-GTGGCAAGTG 131
Query 143 AGGTGGTGAAAGCGAGTGAAGAGTGGGGAATATTTCAGGTGGTTAACCACGGGATTCCGG 202
|||||| |||||||| |||||||||||||||||||||||||||||||||| || |||
Sbjct 132 CGGTGGTCAAAGCGAGCCAAGAGTGGGGAATATTTCAGGTGGTTAACCACGGAATCCCG- 190
Query 203 AG-GAGCTGATGCGGCAGCTGCAAGTGGTTGGGAAAC-AGTTTTTCGACCTCCCCGAGGC 260
| |||||||| | || | ||| | || ||||| |||||||||| || || ||| |
Sbjct 191 ACCGAGCTGATACTGCGGTTGCTACAAGT-GGGAATGGAGTTTTTCGAGCTACCGGAGAC 249
Query 261 GGAGAAGGAAATCGTGGCGAAAGATGGA-GACT--T----C---GAAGGATACA-AG--A 307
||||||||| ||| ||||| | || |||| | | |||||||||| | |
Sbjct 250 AGAGAAGGAAGCCGTAGCGAA-GCCAGAAGACTCCTTGGACATAGAAGGATACAGAACCA 308
Query 308 GG-A--AGTA---TCTAGGAGGTATAAACA-ACTGGGACCAACATCTGTTTCACAG-ACT 359
| | || | ||||| ||||| |||| | |||| | ||||| |||||| | | |
Sbjct 309 AGTACCAGAAAGATCTAGAAGGTAGAAACGCA-TGGGTGGATCATCTCTTTCACCGCA-T 366
Query 360 CTCTCCACCCTCAATCA-TCAATTATAAATAT-TGGCCTAAGAATCCTCCTCAATACAGG 417
|| ||||| || | | ||||| | |||| | ||||||||||||||||| ||||||
Sbjct 367 CTGGCCACCGTCTAG-AGTCAATCACAAAT-TCTGGCCTAAGAATCCTCCAGAATACATT 424
Query 418 GAGGTGACTGAGGAGTACACAAAG-CATATGAAGAGGCTAACGGAGAAGATTCTTGGT-T 475
|| |||| ||| |||||| ||| | || || |||| |||| ||||||| || | ||| |
Sbjct 425 GAAGTGAATGAAGAGTACGCAA-GTCACATAAAGAAGCTATCGGAGAAAAT-CATGGAAT 482
Query 476 GGTTATCAGAAGGATTAGGGTTACCGCGTGAGGCATTCACGCAAAGTATAGGTGGTGAAA 535
|||||||||||||| |||| ||| || |||||| || | | || || |||| || ||||
Sbjct 483 GGTTATCAGAAGGACTAGGTTTAAGGCATGAGGCGTTGAAGGAAGGTCTAGGCGGCGAAA 542
Query 536 CGGCAGAGTATGTTCTTAGGGTCAATTTCTATCCGCCAACTCAAGACTC-GGAATTAGTC 594
|| |||||| | | | |||||| ||||||||| || ||| || ||| ||||||
Sbjct 543 CGATTGAGTATCTAATGAAAATCAATTACTATCCGCCGTGTCCAGA-TCCGGAGTTAGTC 601
Query 595 ATAGGAGC-CGCGGCCCACAGC-GATATGGGTGCAATCGCACTCATCCTCCCGAATGAGG 652
| ||||| | | | |||| | ||| | || |||| ||||| | || | ||||| |
Sbjct 602 GTGGGAGCTC-CTGATCACA-CTGATGTCAATGGAATCACACTCCTAGTCGCTAATGAAG 659
Query 653 -TTCCTGGACTTCAAGCCTTCAAGGACGAAC-AATGGTTGGAC-CTTAACTATATCAACT 709
|| || |||||||| ||||| || ||| ||||| | ||| | | |||| || ||
Sbjct 660 CTTTAGGG-CTTCAAGCATTCAAAGAT-AACCAATGGATCGACGCGGAG-TATACCA-CT 715
Query 710 CTGCCGTGG-T--T-GTTATCATCGGTGATCAACTCATGAGGATGACCAACGGGAGGT-T 764
| ||| || | | || |||||||| |||||| || |||| |||| ||| |||| || |
Sbjct 716 -T-CCG-GGATCATCGTCATCATCGGCGATCAATTCTTGAGAATGAGCAATGGGAAGTAT 772
Query 765 CAAGAACGTGCTTCACAGAGCGAAGACGGATACGGA-AAGATTGAGGATATCTTGGCCTG 823
|||| ||| || || ||||||| ||||| ||| |||| ||| || || ||||| |
Sbjct 773 -AAGAGTGTGGAGCATAGGGCGAAGATGGATAAGGAGAAGAC-GAGAATCTCGTGGCCGG 830
Query 824 TTTTTGTGGCGCCTCGGGCT-GAT-ATGTCCGTCGGACCTTTGCCGGAGCT--T-ACCGG 878
||||||||| || | || ||| | ||| ||||||||||||||||||| | |||||
Sbjct 831 TTTTTGTGGAATCTAGC-CTTGATCAAGTCT-TCGGACCTTTGCCGGAGCTAATTACCGG 888
Query 879 AGACGAGAA 887
|| |||||
Sbjct 889 TGATGAGAA 897
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 47722439650
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5