BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg899871
Length=441
Score E
Sequences producing significant alignments: (Bits) Value
AT1G71720.1 | Symbols: | Nucleic acid-binding proteins superfa... 206 2e-52
> AT1G71720.1 | Symbols: | Nucleic acid-binding proteins superfamily
| chr1:26983721-26985990 FORWARD LENGTH=1623
Length=1623
Score = 206 bits (111), Expect = 2e-52
Identities = 179/210 (85%), Gaps = 12/210 (6%)
Strand=Plus/Plus
Query 13 CTGTACGTGAAGCTTATGGGATTAGATTTGGCTCACGAGATGATGTTT-CGAGTGTTAAA 71
|||| |||| ||||||||||||||||||| |||||||||| ||||||| || ||||| |
Sbjct 220 CTGTTCGTGGAGCTTATGGGATTAGATTTTGCTCACGAGAAGATGTTTCCG-GTGTTGGA 278
Query 72 AATGGAGGAATCGTGGCGGAGGAGGAGGAGCTTGAGCTATTG--CAAGCTAAATCATGTA 129
|||||||||||||||||||||||||| || ||||||||||| ||||| |||| | ||
Sbjct 279 AATGGAGGAATCGTGGCGGAGGAGGA-GA--TTGAGCTATTGAACAAGCCGAATCCTTTA 335
Query 130 ACGAAATTA-ATAGATGAGAAGGAGAGTGGTAACGCCGACGATGACGAGATTCTGGAGCC 188
| |||| | | | || | ||||||||||||| || |||||||||| ||||||||||||
Sbjct 336 CCAAAATCAGA-AAAT--G-AGGAGAGTGGTAAAGCAGACGATGACGCGATTCTGGAGCC 391
Query 189 GTTTTTGAAATTCTTTAAACCAGAAGGAGA 218
||||||||||||||||||||| |||| |||
Sbjct 392 GTTTTTGAAATTCTTTAAACCGGAAGAAGA 421
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 20961651333
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5