BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg899881

Length=234
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT1G17370.1 | Symbols: UBP1B | oligouridylate binding protein 1...  82.4    2e-15


> AT1G17370.1 | Symbols: UBP1B | oligouridylate binding protein 
1B | chr1:5951542-5955037 REVERSE LENGTH=1772
Length=1772

 Score = 82.4 bits (44),  Expect = 2e-15
 Identities = 46/47 (98%), Gaps = 0/47 (0%)
 Strand=Plus/Plus

Query  139  GTATGTTGGAAACATCCATATTCAGGTGACGGAACCTCTGCTTCAAG  185
            ||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct  380  GTACGTTGGAAACATCCATATTCAGGTGACGGAACCTCTGCTTCAAG  426



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 10556227290


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5