BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg899887
Length=792
Score E
Sequences producing significant alignments: (Bits) Value
AT1G19320.1 | Symbols: | Pathogenesis-related thaumatin superf... 433 1e-120
AT2G24810.1 | Symbols: | Pathogenesis-related thaumatin superf... 279 2e-74
> AT1G19320.1 | Symbols: | Pathogenesis-related thaumatin superfamily
protein | chr1:6679281-6680252 FORWARD LENGTH=864
Length=864
Score = 433 bits (234), Expect = 1e-120
Identities = 355/413 (86%), Gaps = 9/413 (2%)
Strand=Plus/Plus
Query 1 ATGACGATTTTCTCCACATTACATCTTCTCTTCTTCTCCTTCATCATAGCCACATGTACA 60
||| ||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||
Sbjct 47 ATGGCGATTTTCTCCACATCACATCTTCTCTTCATCTCCTTCATCATAGCCACATGTACA 106
Query 61 ATTTCCATTGTCTCCGGCACCGTCTTCACTTTATCGAACCGCTGCAGCTTCACCGTCTGG 120
||||| | |||||||| || |||||| ||| | |||| ||| ||| ||| |||||
Sbjct 107 ATTTC--T-GTCTCCGGTACAACCTTCACCTTAACAAACCATTGCGGCTCCACAATCTGG 163
Query 121 CCCGGAATCCTAACCGCAAAAT-CAAGACTAA-TCGGCGACGGCGGATTTGCCTTACCTT 178
|| |||||||| |||||||| | || || ||||||||||||||||||||||| |||
Sbjct 164 CCTGGAATCCTCACCGCAAACGGCGC-AC-AACTCGGCGACGGCGGATTTGCCTTAGCTT 221
Query 179 CAGGATCTTCTGTTAAC-TTAACCGTTTCTCCAGGTTGGTCCGGTCGATTCTGGGGTCGA 237
|||||||||| || ||| || ||||||||||||||||||||||||||||| |||| ||||
Sbjct 222 CAGGATCTTCCGT-AACCTTCACCGTTTCTCCAGGTTGGTCCGGTCGATTTTGGGCTCGA 280
Query 238 ACGGGTTGCAACTTCGACGCCTCGGGTTCCGAAAAATGCACCACCGGAGACTGCGGCGGC 297
||| ||| |||||||||||||| || || | |||||| ||||| ||||||||| ||
Sbjct 281 ACGTATTGTAACTTCGACGCCTCAGGCTCAGGTAAATGCGGTACCGGGGACTGCGGCAGC 340
Query 298 AAGTTAAAATGCGCCGGCGCAGAAGGAGCTCCACCAACCACACTAGCCGAATTCAGAATC 357
|||||||||||||||||||||| ||||||||||||| ||||||| |||||||||| ||||
Sbjct 341 AAGTTAAAATGCGCCGGCGCAGGAGGAGCTCCACCAGCCACACTCGCCGAATTCACAATC 400
Query 358 GGCTCCTCCGGAAAGGAATACGCCGTACAAGATTCCTACGACGTGAGCCTCGT 410
||||||||||||||| || ||||||| ||||||| |||||||||||||||||
Sbjct 401 GGCTCCTCCGGAAAGAAAAACGCCGTGCAAGATTTTTACGACGTGAGCCTCGT 453
> AT2G24810.1 | Symbols: | Pathogenesis-related thaumatin superfamily
protein | chr2:10573862-10574699 FORWARD LENGTH=582
Length=582
Score = 279 bits (151), Expect = 2e-74
Identities = 188/206 (91%), Gaps = 2/206 (1%)
Strand=Plus/Plus
Query 7 ATTTTCTCCACATTACATCTTCTCTTCTTCTCCTTCATCATAGCCACATGTACAATTTCC 66
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 7 ATTTTCTCCAAATTACATCTTCTCTTCTTCTCCTTCATCATAGCCACATGTACAATTTCT 66
Query 67 ATTGTCTCCGGCACCGTCTTCACTTTATCGAACCGCTGCAGCTTCACCGTCTGGCCCGGA 126
||||||||||||||||||||||||||||| |||||||||| ||| || || |||||||||
Sbjct 67 ATTGTCTCCGGCACCGTCTTCACTTTATCAAACCGCTGCAACTTTACTGTGTGGCCCGGA 126
Query 127 ATCCTAACCGCAAAAT-CAAGACTAATCGGCGACGGCGGATTTGCCTTACCTTCAGGATC 185
|||||||||||||| || |||| || ||| |||||||||||||||| ||||||| ||
Sbjct 127 ATCCTAACCGCAAACCGCAC-ACTACTCCGCGGCGGCGGATTTGCCTTAGCTTCAGGTTC 185
Query 186 TTCTGTTAACTTAACCGTTTCTCCAG 211
|||||| |||||||||||||||||||
Sbjct 186 TTCTGTAAACTTAACCGTTTCTCCAG 211
Score = 257 bits (139), Expect = 1e-67
Identities = 170/185 (92%), Gaps = 2/185 (1%)
Strand=Plus/Plus
Query 571 GCTTTTAACAAACCGGAGTATTGTTGCACCGGCGCTTTCAATAGACCGGAGACTTGTCCG 630
|||||||||||||||||||||||||||||||||||||||| || |||||||||||| |||
Sbjct 400 GCTTTTAACAAACCGGAGTATTGTTGCACCGGCGCTTTCAGTAAACCGGAGACTTGCCCG 459
Query 631 CCGAAGAAATACTCGAAGATATTCAAAGGAGCTTGTCCCACTGCGAATAGCTATGTATAC 690
|||| |||||||||||||||||| ||||||||||||||||||||| |||||||||| |||
Sbjct 460 CCGACGAAATACTCGAAGATATTTAAAGGAGCTTGTCCCACTGCGTATAGCTATGTGTAC 519
Query 691 AATTATGCTTCGAGTAGATTTACTTGTAATAATATGCCAATTACGTTATCAGTTTCTGTT 750
|||||||||||||||||||||| |||| || | || ||||| ||||||||||||||||
Sbjct 520 GATTATGCTTCGAGTAGATTTACATGTACTAGT--GCTAATTATGTTATCAGTTTCTGTT 577
Query 751 CTTAG 755
|||||
Sbjct 578 CTTAG 582
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 38529590749
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5