BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg899891
Length=672
Score E
Sequences producing significant alignments: (Bits) Value
AT2G24840.1 | Symbols: AGL61, DIA | AGAMOUS-like 61 | chr2:1058... 994 0.0
> AT2G24840.1 | Symbols: AGL61, DIA | AGAMOUS-like 61 | chr2:10581082-10582015
FORWARD LENGTH=934
Length=934
Score = 994 bits (538), Expect = 0.0
Identities = 629/672 (94%), Gaps = 9/672 (1%)
Strand=Plus/Plus
Query 8 AAAAGCAACTAAGAACCCGCCAT---AACAAAACTATGATGTCGAAGAAGAAAGAAAGCA 64
|||||||||||| ||||| |||| || |||||||||||||||||||||||||||||||
Sbjct 126 AAAAGCAACTAA-AACCCTCCATACAAAAAAAACTATGATGTCGAAGAAGAAAGAAAGCA 184
Query 65 TCGGACGACAAAAAATTCCAATGGTGAAAATAAAGAAAGAGAGCCACCGGCAAGTCACAT 124
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 185 TCGGACGACAAAAAATTCCAATGGTAAAAATAAAGAAAGAGAGCCACCGGCAAGTCACAT 244
Query 125 TCTCGAAACGCAGAGCCGGTCTCTTCAAGAAAGCTAGTGAGCTCTGCACGTTGTGTGGTG 184
|||| |||||||||||||||||||||||||||||||||||||| ||||| ||||||||||
Sbjct 245 TCTCCAAACGCAGAGCCGGTCTCTTCAAGAAAGCTAGTGAGCTTTGCACTTTGTGTGGTG 304
Query 185 CAGAGATTGGGATCATCGTGTTTTCTCCTGCAAAAAAGCCTTTCTCATTCGGACATCCGA 244
|||||||||||||||||||||||||||| || |||||||||||||||||||||||||| |
Sbjct 305 CAGAGATTGGGATCATCGTGTTTTCTCCCGCGAAAAAGCCTTTCTCATTCGGACATCCAA 364
Query 245 GTGTCGAATCTGTATTGGATCGTTACATGTCTCGAAACAATATGTCCTTAGTTCAGACGC 304
|||| ||||||||||||||||| ||| |||||||||||||||||||||||| |||| |||
Sbjct 365 GTGTTGAATCTGTATTGGATCGCTACGTGTCTCGAAACAATATGTCCTTAGCTCAGTCGC 424
Query 305 AGCAACCGCAAGGAAGCCCTGCAGCGAGCTGCGAGCTGAATATGCAGTTAACGCATATTT 364
|||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 425 AGCAACTGCAAGGAAGCCCTGCAGCGAGCTGCGAACTGAATATGCAGTTAACGCATATTT 484
Query 365 TGAGCGAGGTagaggaagagaagaagaaaggtcaagctatggaagaaatgagaaaagaga 424
||||||||||||| |||||||||||||| |||||||| |||||||| |||||||||||||
Sbjct 485 TGAGCGAGGTAGAAGAAGAGAAGAAGAAGGGTCAAGCGATGGAAGAGATGAGAAAAGAGA 544
Query 425 gTGTGAGGCGGTCGATGATCAATTGGTGGGAAAAGCCAGTAGAGGAGATGAATTTGGTTC 484
||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||
Sbjct 545 GTGTGAGGCGGTCGATGATTAATTGGTGGGAAAAGCCAGTAGAGGAGATGAATATGGTTC 604
Query 485 AGTTACAAGAAATGAAATATGCATTGGAGGAGTTGAGGAAGACGGTTGTGACAAATATGG 544
||||||| |||||||| |||||||||||||||||||||||||||||||||||||| ||||
Sbjct 605 AGTTACAGGAAATGAAGTATGCATTGGAGGAGTTGAGGAAGACGGTTGTGACAAACATGG 664
Query 545 CATCGTTTAATGAGGCGAAAGACGATGTGTTTGGTTTCTTGGACAACAAAGTGACGGCTC 604
| |||||||||||||| |||||||||||||||||||||||||||||||||||||| | ||
Sbjct 665 CGTCGTTTAATGAGGCCAAAGACGATGTGTTTGGTTTCTTGGACAACAAAGTGACAG-TC 723
Query 605 C-TCCTTACATGAACATGTCTTCTGGTCTCTCAAGTATTTATTAT---GCCAACGGAAAT 660
| ||||||| |||||||| ||||||||| ||||| ||||||| || ||||| ||||||
Sbjct 724 CCTCCTTACGTGAACATGCCTTCTGGTCCCTCAAATATTTATAATTTTGCCAATGGAAAT 783
Query 661 GGTTGTTTCTGA 672
||||||||||||
Sbjct 784 GGTTGTTTCTGA 795
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 32501493109
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5