BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg899893

Length=204
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT3G02780.1 | Symbols: IPP2, IPIAT1, IDI2 | isopentenyl pyropho...   278    2e-74


> AT3G02780.1 | Symbols: IPP2, IPIAT1, IDI2 | isopentenyl pyrophosphate:dimethylallyl 
pyrophosphate isomerase 2 | chr3:602433-604684 
REVERSE LENGTH=1036
Length=1036

 Score =  278 bits (150),  Expect = 2e-74
 Identities = 170/179 (95%), Gaps = 3/179 (2%)
 Strand=Plus/Plus

Query  19   TTGATCCGCCTCAGATCTCTCGCTCTTTCGTCTTC---TTCTTCTTTCCGATTTGCACAT  75
            ||||| |||||||||||||||||||||||||||||   |||||||||||||||||| |||
Sbjct  67   TTGATTCGCCTCAGATCTCTCGCTCTTTCGTCTTCTTTTTCTTCTTTCCGATTTGCCCAT  126

Query  76   CGTCCTCTGTCATCGATTTCACCGATAAAGTTACCGAATTTTCGTGCTTTCTCGGGTACC  135
            ||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||
Sbjct  127  CGTCCTCTGTCATCGATTTCACCGAGAAAGTTACCGAATTTTCGTGCTTTCTCTGGTACC  186

Query  136  GCAATGACAGATACTAAAGATGCTGGTAAGGATGCTGTTCAGAGACGTCTCATGTTTGA  194
            || ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct  187  GCTATGACAGATACTAAAGATGCTGGTATGGATGCTGTTCAGAGACGTCTCATGTTTGA  245



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 9104544531


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5