BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg899894
Length=360
Score E
Sequences producing significant alignments: (Bits) Value
AT5G43070.1 | Symbols: WPP1 | WPP domain protein 1 | chr5:17289... 320 5e-87
> AT5G43070.1 | Symbols: WPP1 | WPP domain protein 1 | chr5:17289100-17289776
REVERSE LENGTH=677
Length=677
Score = 320 bits (173), Expect = 5e-87
Identities = 238/268 (89%), Gaps = 10/268 (4%)
Strand=Plus/Plus
Query 22 TCAATCCTCTCTAAGAGATTCATCA-CTCTCGAATCCGAAGAAGCTTCCTCCGTCGCGAA 80
||||||||||| ||||||||| | |||| |||||||||||||||||||||||||||||
Sbjct 249 TCAATCCTCTCCAAGAGATTC-GGATCTCTTGAATCCGAAGAAGCTTCCTCCGTCGCGAA 307
Query 81 ATCAATCGAAGACGAAGCATACGCCGTCGCTTCCGCCGCCGTGATTAG-TGACGACGACG 139
|||||||||||||||||| |||||| ||||||| ||| |||| ||| | ||| |||||||
Sbjct 308 ATCAATCGAAGACGAAGCTTACGCCATCGCTTCTGCCACCGT-ATTCGGTGATGACGACG 366
Query 140 AGATCGAGATTCTTAAAACTTATTCTAAAGAGATTAGTAAACGTATGCTTGAATCTGTGA 199
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
Sbjct 367 GGATCGAGATTCTTAAAGCTTATTCTAAAGAGATTAGTAAACGTATGCTTGAATCTGTTA 426
Query 200 AAGCTAAGACG-AATGTGGCTTCTCCTCCACCAAAAGATGGTG--G-AATTGAATTAGCT 255
| ||||||| | |||||||||||||||||||| || ||||||| | |||||||| ||||
Sbjct 427 AGGCTAAGA-GTAATGTGGCTTCTCCTCCACCGAAGGATGGTGATGGAATTGAATCAGCT 485
Query 256 GCAGATTCGAGG-TTGATTCAAGTGAAG 282
| ||||||| | |||||||||||||||
Sbjct 486 GTTGATTCGAAGATTGATTCAAGTGAAG 513
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 16889963664
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5