BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg899927
Length=891
Score E
Sequences producing significant alignments: (Bits) Value
AT2G25100.1 | Symbols: | Polynucleotidyl transferase, ribonucl... 1469 0.0
> AT2G25100.1 | Symbols: | Polynucleotidyl transferase, ribonuclease
H-like superfamily protein | chr2:10679524-10681998 REVERSE
LENGTH=1231
Length=1231
Score = 1469 bits (795), Expect = 0.0
Identities = 859/891 (96%), Gaps = 0/891 (0%)
Strand=Plus/Plus
Query 1 ATGGAATCTGATTGTTTGACACCAGAATGGTCTTCTCAGCCTTGTCTAATGGGTATTGAC 60
||||||||||| |||||||||||||||||| | ||||| ||||||||||||||||| ||
Sbjct 98 ATGGAATCTGAATGTTTGACACCAGAATGGGCATCTCAACCTTGTCTAATGGGTATCGAT 157
Query 61 GAAGCCGGAAGGGGTCCTGTTCTAGGTCCTATGGTTTATGGATGTATGTATTGTCCCATT 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 158 GAAGCCGGAAGGGGTCCTGTTCTAGGTCCTATGGTTTATGGATGTATGTATTGTCCCATT 217
Query 121 TCCTATCAGTCTTCTCTTGCTTCTCTCCATTTTGCAGATTCAAAGACTCTAAAAGAGGAG 180
||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 218 TCCTATCAGTCGTCTCTTGCTTCTCTCCATTTTGCAGATTCGAAGACTCTAAAAGAGGAG 277
Query 181 AAAAGAGAAGAGTTATATGAAAACTTAAAGCTTGACAAGTCACTTGGATGGGCTGTTGAT 240
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 278 AAAAGAGAAGAGTTATATGAAAGCTTAAAGCTTGACAAGTCACTTGGATGGGCTGTTGAT 337
Query 241 GTCATTGATCCCAGAGAACTCTCAGCAAAGATGCTCGCAAAAAACAAGACTAATTTAAAT 300
||||||||||| || ||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 338 GTCATTGATCCTAGGGAACTCTCAGCCAAGATGCTCGCAAAAAACAAGACTAATTTAAAT 397
Query 301 GAGATTTCACATAACTCTGCAATGGGGCTAATCAAAAGGGTACTAGACATGGGAGTTCTT 360
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 398 GAGATTTCACATAACTCTGCAATGGGGCTTATCAAAAGGGTACTAGACATGGGAGTTCTT 457
Query 361 CTAACAGAGGCTTATCTGGATACCGTGGGAGATCCTGAGAAGTACAGGATAAAATTGTCT 420
|| |||||||||||||||||||||||||||||||| || |||||||| ||||||||||||
Sbjct 458 CTGACAGAGGCTTATCTGGATACCGTGGGAGATCCCGACAAGTACAGAATAAAATTGTCT 517
Query 421 GAGAGGTTTCCTTCGATCAAGTTTGTCGTTTCAAAGAAAGCTGACAGTCTATTTCCTATT 480
||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||
Sbjct 518 GAGAGGTTTCCTTCGATCAAGTTCGTCGTTTCAAAGAAAGCTGACAGTCTATTTCCGATT 577
Query 481 GTTAGTGGAGCAAGTATTGTGGCCAAGGTGACAAGAGACAGAGCGTTGAGAGAATGGTTG 540
|||||||| |||||||||||||| ||||||||||||||||||||||||| ||||||||||
Sbjct 578 GTTAGTGGGGCAAGTATTGTGGCTAAGGTGACAAGAGACAGAGCGTTGAAAGAATGGTTG 637
Query 541 GTAGAGGAAACCGGAGAAGATATAAATAGAAACTTTGGTTCTGGATATCCTGGAGATCCT 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 638 GTAGAGGAAACCGGAGAAGATATAAATAGAAACTTTGGTTCTGGATATCCTGGAGATCCT 697
Query 601 GAGACAAAGGCATGGTTAGTGCAACACAAACATTCTGTATTTGGATTCCCATCACTGGTC 660
||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 698 GAGACAAAGGCGTGGTTAGTGCAACACAAACATTCTGTGTTTGGATTCCCATCACTGGTC 757
Query 661 CGCTTCAGTTGGGGAACTTGCACTGCACATTTGAAGGGCGAGGTTGCAGTTGCATGGGAA 720
|||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||
Sbjct 758 CGCTTCAGTTGGGGAACTTGCACTACACATTTGAAGGGCGAGGTTGAAGTTGCATGGGAA 817
Query 721 GCAGATGAAACCGAAGAGAGTGGTAATGGAAGTAGCAGCAAACGACAAGCGAAACTAAGC 780
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 818 GCAGATGAAAATGAAGAGAGTGGTAATGGAAGTAGCAGCAAACGACAAGCGAAACTAAGC 877
Query 781 AGTTTTGGGTTCAAAACATGCGAGAAAAGGAGCGAAGAAATCGAATCGAGTGGAAAAGGG 840
||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||
Sbjct 878 AGTTTTGGGTTCAAAACATGCGAGAAAAGAAGCGAAGAAATCGAGTCGAGTGGAAAAGGA 937
Query 841 CGCTGCAAATTTTTCCAAGCTCGCAAAATCCAACAACTCACTCAGTTTTAG 891
|||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 938 CGCTGCAAATTTCTCCAAGCTCGCAAAATCCAACAACTCACTCAGTTTTAG 988
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 43502771302
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5