BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg899929
Length=1353
Score E
Sequences producing significant alignments: (Bits) Value
AT2G25120.1 | Symbols: | Bromo-adjacent homology (BAH) domain-... 1290 0.0
> AT2G25120.1 | Symbols: | Bromo-adjacent homology (BAH) domain-containing
protein | chr2:10689934-10691569 FORWARD LENGTH=1143
Length=1143
Score = 1290 bits (698), Expect = 0.0
Identities = 986/1115 (88%), Gaps = 60/1115 (5%)
Strand=Plus/Plus
Query 61 TCGAACACCaaagaaacagagaagaagcagatgaagcggaagaaggattgcaaggaaaag 120
||||||||||||||||| ||||||||||||| ||||||||||||||||||| ||||||||
Sbjct 55 TCGAACACCAAAGAAACGGAGAAGAAGCAGAGGAAGCGGAAGAAGGATTGCGAGGAAAAG 114
Query 121 catgagaagaagcg---gaa-ga-t-----g--aa--TTG-GACAAAGGAAATGGAGTTA 165
|| |||||||||| ||| || | | || || ||| |||||||||||||||
Sbjct 115 AATAAGAAGAAGCGAAAGAAGGATTGCGAGGAAAAGCATGAGACGAAGGAAATGGAGTTA 174
Query 166 GAGTGGAGACCTGAGGATTGTGCGCAGCCATTCGGGGAAGTGAGTAAGGTTACTGGTAAG 225
| ||||| ||||||||||||||| ||||||| || |||||||||||||||||||| |||
Sbjct 175 GCGTGGAAACCTGAGGATTGTGCTAAGCCATTAGGCGAAGTGAGTAAGGTTACTGGGAAG 234
Query 226 GGTGCAAAGaaaaaaaGTCATTACAAGACATTCAAC-TTTCGTGGC-ACACAATATG-GA 282
|| ||||||||||||||||| ||| |||||| || ||||| ||| || ||||||| |
Sbjct 235 GGAAAAAAGAAAAAAAGTCATTTCAAAACATTC-ACGTTTCGAGGCAAC-CAATATGCG- 291
Query 283 CTGGAGGATTCAGTGCTATTGGTTCCAGACGACCCTAACAGCAAGCCCTATGGTGCCATT 342
|||||||||||||||| |||||||||||||||||| ||||||||||||||| ||||||||
Sbjct 292 CTGGAGGATTCAGTGCAATTGGTTCCAGACGACCCAAACAGCAAGCCCTATTGTGCCATT 351
Query 343 ATAAAGGATATTTATATACCAAACAAAGAAAAATACGTGAAACTTTCAGTCCAGTGGTTT 402
||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||
Sbjct 352 ATAAAGGATATTTATATACCAAACAAAGAAAAATACGTGAAACTTGCAGTCCATTGGTTT 411
Query 403 TATCGCCCAGAGGATGTGGATAAAAAACATGTTGGAAAATGGGAATCAAAAGATTCAAGA 462
||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 412 TATCGTCCAGAGGATGTGGATAAAAAACATGTTGGAAAATGGGAATCCAAAGATTCAAGA 471
Query 463 AGCCTATTCTACAGTTTCCATTGCGATGAAGTGTTTGCTGAATCTGTGAAGTACAAGTGT 522
| ||| ||||||||||||||| | ||||| ||||||||||||||||||||| ||||||||
Sbjct 472 AACCTGTTCTACAGTTTCCATCGTGATGAGGTGTTTGCTGAATCTGTGAAGCACAAGTGT 531
Query 523 GTTGTGAATTTCGTGCCAGAGAATAAGCAAATCCCAAACCGTAGTGAGCAACCTGGCTTC 582
||||||||||||||||| || ||||||||||||||||||||||| ||||| ||| |||||
Sbjct 532 GTTGTGAATTTCGTGCCGGAAAATAAGCAAATCCCAAACCGTAGAGAGCATCCTTGCTTC 591
Query 583 ATCGTGCAACATGTTTATGATTTTGTTAAGAAGAAGCTGAGGAAGTTCACTGATAATGT- 641
||||||||| |||||||||||||||||||||||||| ||||||||||||||||||| |
Sbjct 592 ATCGTGCAAAATGTTTATGATTTTGTTAAGAAGAAGGTGAGGAAGTTCACTGATAA-GAA 650
Query 642 CTTTGACGTGCACCAAAAGGATGAGATTGATCGTCTTGTGGCAAAGACGATTTTACGAGT 701
||||||||||||||||||| |||||||||||||||||||||||||||||| |||||| |
Sbjct 651 CTTTGACGTGCACCAAAAGAATGAGATTGATCGTCTTGTGGCAAAGACGAGTTTACGCCT 710
Query 702 TGGTGATCTTCCTGACATTGAGAAAGATCAAAAGACTAAGAATTCAAGAAG-TAAAAGAA 760
||||||||||||||||||||||||||| ||| |||||||| ||||| | | ||||||||
Sbjct 711 TGGTGATCTTCCTGACATTGAGAAAGACCAAGTGACTAAGACTTCAA-AGGGTAAAAGAA 769
Query 761 TTGTTCAGAAAGAGTATATGGGAAGAGCTAAGAGAAGGAGTCCTAAAGCCGGGACGGTTT 820
|||||||| || | | | | | |||| | | || | | |||||||
Sbjct 770 CTGTTCAGA--GA--A-A-G--A-GTCCTAA-A-A------CC-A--GT----ACGGTTT 805
Query 821 ATAAGTCGATCTTGGAGGATTTTGATTTGTTAACCGGTGATTCGGATCGTGACAAGGGAT 880
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 806 ATAAGTCGATCTTGGAGGATTTTGATTTGTTAACCGGTGATTCGGATCGTGACAAGCGAT 865
Query 881 TGGAGGAGCTCCTGGAAGCAGTTAAGCACGAGTGTCGTACAACTAAGAAGAAACAAGCTC 940
||| |||||||||||||||||||||||||||||||||||||| |||||||||| ||||
Sbjct 866 TGGGGGAGCTCCTGGAAGCAGTTAAGCACGAGTGTCGTACAAGTAAGAAGAAAGGGGCTC 925
Query 941 GTGAT-AGTGATTTTTACTGGCCAGATGATGTTGTTCCGGTGGTTCGAGCTCTTGAGCAG 999
||||| | ||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 926 GTGATGA-TGATTCTTACTGGCCAGATGATGTTGTTCCGGTGGTTCGAGCTCTTGAGCAT 984
Query 1000 GT-TTTATATGATTCTTTGGCAGAAGATATGTCAAAGTA-CAATCACAAGTTGGAGATTA 1057
|| ||| ||||||||| |||||||||||||||||||||| || ||||||||||||||||
Sbjct 985 GTCTTT-TATGATTCTATGGCAGAAGATATGTCAAAGTATCA-TCACAAGTTGGAGATTC 1042
Query 1058 TGGTCGAT-AATCTCAAGGTTAGTTTTATTCCTTT-ATCTCCTCCATCCTATAtttttct 1115
|||| ||| || |||||||||||||| |||||||| | ||| |||||||||||||||| |
Sbjct 1043 TGGTTGATGAA-CTCAAGGTTAGTTTAATTCCTTTCA-CTCATCCATCCTATATTTTTAT 1100
Query 1116 ttttgttttgcatgttcttgttttctattt-tttt 1149
|||||||||||||||||||| ||||||||| ||||
Sbjct 1101 TTTTGTTTTGCATGTTCTTGATTTCTATTTATTTT 1135
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 66616123215
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5