BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg899935
Length=324
Score E
Sequences producing significant alignments: (Bits) Value
AT4G32120.1 | Symbols: | Galactosyltransferase family protein ... 414 2e-115
AT2G25300.1 | Symbols: | Galactosyltransferase family protein ... 219 2e-56
> AT4G32120.1 | Symbols: | Galactosyltransferase family protein
| chr4:15516784-15519855 REVERSE LENGTH=1652
Length=1652
Score = 414 bits (224), Expect = 2e-115
Identities = 284/312 (91%), Gaps = 7/312 (2%)
Strand=Plus/Plus
Query 1 ATGGAGAGCTTACCAACGACGGTCTCTGCTAAATCAGACCGGCGAGGTAGGCCTTCTAAG 60
|||||||||||||||||||||||||| | ||||||||||||||||||||| ||| |||
Sbjct 169 ATGGAGAGCTTACCAACGACGGTCTCAGGGAAATCAGACCGGCGAGGTAGGTTTTCCAAG 228
Query 61 TCTCAGAACACCTCCAAGCCCTCTCTTATCTTAGCCTTCTTCTCCTGTCTAGCTTGGCTC 120
|||||||||||||||||||||||||||||||| ||||||||||| ||||| |||||||||
Sbjct 229 TCTCAGAACACCTCCAAGCCCTCTCTTATCTTGGCCTTCTTCTCTTGTCTTGCTTGGCTC 288
Query 121 T-GGCCGCTTACCTTTAGGTTGTGGCAAGATGCACAGTACAGAGCAGCACTCAATACTGT 179
| | |||| || |||| ||||||||||| ||||||||||||||||||||||||||
Sbjct 289 TACGTCGCTGGCC----GGTTATGGCAAGATGCGCAGTACAGAGCAGCACTCAATACTGT 344
Query 180 GCTTAAGAAGAATTATGATCAGAGGCCTAAGGTTCTTACGGTGGAGGACAAGC-TGCTAG 238
|||||||| |||||||||||||||||||||||||||||||||||||||||| | || | |
Sbjct 345 GCTTAAGATGAATTATGATCAGAGGCCTAAGGTTCTTACGGTGGAGGACAAACTTG-TGG 403
Query 239 CCCTTGGATGCAAAGATCTTGAGAGGAGAATTGTTGAAACTGGAATGGAGTTGGCACATG 298
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
Sbjct 404 TCCTTGGATGCAAAGATCTTGAGAGGAGAATTGTTGAAACTGAAATGGAGTTGGCACAGG 463
Query 299 CAAAGAGTCAAG 310
||||||||||||
Sbjct 464 CAAAGAGTCAAG 475
> AT2G25300.1 | Symbols: | Galactosyltransferase family protein
| chr2:10771694-10774294 REVERSE LENGTH=1407
Length=1407
Score = 219 bits (118), Expect = 2e-56
Identities = 254/318 (80%), Gaps = 16/318 (5%)
Strand=Plus/Plus
Query 1 ATGGAGAGCTTACCAACGACGG-TCTCTGCTAAATCAGACCGGCGAGGTAG-GCCTTCTA 58
|||||||||||||| ||||||| || || | |||||||| || |||| | | || || |
Sbjct 139 ATGGAGAGCTTACCCACGACGGTTCCCT-CCAAATCAGAACGACGAGCTCGTTCC-TCCA 196
Query 59 AG---TCTCAGAACACCTCCAAGCCCTCTCTTATCTTAGCCTTCTTCTCCTGTC-TAGCT 114
|| ||||||| |||| ||||| || |||| | || |||||||| || | | |||
Sbjct 197 AGTTTTCTCAGAGTTCCTCTAAGCCTTCGGTTATAATGGCTTTCTTCTCTTG-CGTCGCT 255
Query 115 TGGCTCT-GGCCGCTTACCTTTAGGTTGTGGCAAGATGCACAGTACAGAGCAGCACTCAA 173
||||||| | ||| | | ||||| |||||||||||| || | |||| | ||||||
Sbjct 256 TGGCTCTACGTCGC-TGGC---AGGTTATGGCAAGATGCAGAGAATAGAGTGGTACTCAA 311
Query 174 TACTGTGCTTAAGAAGAATTATGATCAGAGGCCTAAGGTTCTTACGGTGGAGGACAAGCT 233
|| | | |||||||||| ||||||||||| ||||||||||||||||||||| ||||||||
Sbjct 312 TAATATACTTAAGAAGAGTTATGATCAGAAGCCTAAGGTTCTTACGGTGGATGACAAGCT 371
Query 234 GCTAGCCCTTGGATGCAAAGATCTTGAGAGGAGAATTGTTGAAACTGGAATGGAGTTGGC 293
| | ||| ||||||||||||||||||||||||||||||||||||| |||||||||| |
Sbjct 372 TATGGTCCTAGGATGCAAAGATCTTGAGAGGAGAATTGTTGAAACTGAAATGGAGTTGAC 431
Query 294 ACATG-CAAAGAGTCAAG 310
| || | ||||||||||
Sbjct 432 TC-TGGCTAAGAGTCAAG 448
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 15080324700
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5