BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg899936
Length=666
Score E
Sequences producing significant alignments: (Bits) Value
AT3G07220.1 | Symbols: | SMAD/FHA domain-containing protein |... 898 0.0
AT3G07260.1 | Symbols: | SMAD/FHA domain-containing protein |... 821 0.0
> AT3G07220.1 | Symbols: | SMAD/FHA domain-containing protein
| chr3:2297886-2299572 FORWARD LENGTH=1210
Length=1210
Score = 898 bits (486), Expect = 0.0
Identities = 594/645 (92%), Gaps = 12/645 (2%)
Strand=Plus/Plus
Query 1 ATGGCTACGGCTGTTGGAGGCGGAAGCGATGTGGAGGTTGGATTTGCGAAGCTTCAAGGT 60
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 83 ATGGCTACGGCTGTTGGTGGCGGAAGCGATGTGGAGGTTGGATTTGCGAAGCTTCAAGGT 142
Query 61 GAGGATTTCGAATACTATATGCAGTCTTACTCCATTATACTCGGTCGGAATTCTAAGAAA 120
||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 143 GAGGATTTCGAGTACTATATGCAGTCTTACTCCATTATACTCGGCCGGAATTCTAAGAAA 202
Query 121 GCGACCGTCGACGTTGATCTCTCATCTCTCGGCGGCGGGATGAACATTTCGCGTAACCAC 180
|| ||||||||||||||||||||||| |||||||| ||||||||||| ||||| ||||||
Sbjct 203 GCCACCGTCGACGTTGATCTCTCATCCCTCGGCGGTGGGATGAACATCTCGCGCAACCAC 262
Query 181 GCTCGGATCTTCTATGACTTCACTAGACGACGCTTCTCTCTCGAGGTCCTTGGCAAAAAT 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 263 GCTCGGATCTTCTATGACTTCACTAGACGACGCTTCTCTCTCGAGGTCCTTGGCAAAAAT 322
Query 241 GGCTGCTTCGTTGAAGGTGTCCTCCATCTCCCTGGGAATCCTAACGTCAAGCTCGATTCA 300
|||||| ||||||||||||| || ||||||||||||||||||||||||||||||||||||
Sbjct 323 GGCTGCCTCGTTGAAGGTGTTCTTCATCTCCCTGGGAATCCTAACGTCAAGCTCGATTCA 382
Query 301 CAAGACCTTTTGCAGATTGGTGACAAAGAGTTTTACTTCCTGCTTCCGGTTCGGAGTATC 360
||||||||||||||||| || ||||||||||| ||||| || || ||||||||||| |||
Sbjct 383 CAAGACCTTTTGCAGATCGGAGACAAAGAGTTCTACTTTCTCCTACCGGTTCGGAGCATC 442
Query 361 CTAGACGGGCCATTGGGACCCAGGCACCACGTCTCAGGGCAGACTAGTGTTGTTCCGTAC 420
||| |||||| |||||||| |||||||||||||| ||||| || ||||||||||| |||
Sbjct 443 TTAGGCGGGCCGTTGGGACCTAGGCACCACGTCTCTGGGCAAACAAGTGTTGTTCCATAC 502
Query 421 CACAACTATCATTCGGGTCCAGGTTCCGGGTCGGGTAAGAAGGCCGTCCGGAGTAGAGAG 480
|| || ||||| |||||||||||||| |||||||||||||||| |||| |||||||||||
Sbjct 503 CATAATTATCAGTCGGGTCCAGGTTCTGGGTCGGGTAAGAAGGGCGTCAGGAGTAGAGAG 562
Query 481 TTGTATGAGTTCGATGTTGAAGATGATGATGACGACGACGATGAGGAGGA---TATCAGG 537
|||||||||| ||||| ||||||||||||||||||||||||||||||||| ||| ||
Sbjct 563 TTGTATGAGTACGATGATGAAGATGATGATGACGACGACGATGAGGAGGACGATATGAGA 622
Query 538 GGAAGTGAAAAGAAAACAAGGAGAGATGGATATGAAGTAGTATATGCTTCCGGAGAGAAG 597
||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 623 GGAAGTGGAAAGAAAACAAGGAGAGATGGACATGAAGTAGTATATGCTTCCGGAGAGAAG 682
Query 598 AAGAGA---------TCAAAGGTAGATCGTCAAGCTGATGATCAA 633
|||||| ||||||||||||||| ||||||||||||||
Sbjct 683 AAGAGAGAGGGAAGATCAAAGGTAGATCGTGAAGCTGATGATCAA 727
> AT3G07260.1 | Symbols: | SMAD/FHA domain-containing protein
| chr3:2309704-2310788 FORWARD LENGTH=914
Length=914
Score = 821 bits (444), Expect = 0.0
Identities = 580/643 (90%), Gaps = 20/643 (3%)
Strand=Plus/Plus
Query 1 ATGGCTACGGCTGTTGGAGGCGGAAGCGATGTGGAGGTTGGATTTGCGAAGCTTCAAGGT 60
|||||||| || |||||| |||| |||||||| |||||||||||||||||||| ||||||
Sbjct 1 ATGGCTACAGCCGTTGGAAGCGGGAGCGATGTAGAGGTTGGATTTGCGAAGCTCCAAGGT 60
Query 61 GAGGATTTCGAATACTATATGCAGTCTTACTCCATTATACTCGGTCGGAATTCTAAGAAA 120
||||||||||| |||||||||||||||||||||||||| ||||| |||||||||||||||
Sbjct 61 GAGGATTTCGAGTACTATATGCAGTCTTACTCCATTATTCTCGGCCGGAATTCTAAGAAA 120
Query 121 GCGACCGTCGACGTTGATCTCTCATCTCTCGGCGGCGGGATGAACATTTCGCGTAACCAC 180
||||||||||||| || ||||||||||||||||| |||||||||||||| || ||||||
Sbjct 121 TCGACCGTCGACGTCGACCTCTCATCTCTCGGCGGTGGGATGAACATTTCTCGCAACCAC 180
Query 181 GCTCGGATCTTCTATGACTTCACTAGACGACGCTTCTCTCTCGAGGTCCTTGGCAAAAAT 240
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 181 GCTCGGATCTTCTATGACTTCACTAGACGACGCTTCTCTCTCGAGGTACTTGGCAAAAAT 240
Query 241 GGCTGCTTCGTTGAAGGTGTCCTCCATCTCCCTGGGAATCCTAACGTCAAGCTCGATTCA 300
|||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||
Sbjct 241 GGCTGCTTCGTTGAAGGTGTCCTCCATCTCCCTGGGAACCCCAACGTCAAGCTCGATTCA 300
Query 301 CAAGACCTTTTGCAGATTGGTGACAAAGAGTTTTACTTCCTGCTTCCGGTTCGGAGTATC 360
|| ||||||||||||||||||||||| ||||| |||||||||||||||||| ||||||||
Sbjct 301 CAGGACCTTTTGCAGATTGGTGACAAGGAGTTCTACTTCCTGCTTCCGGTTTGGAGTATC 360
Query 361 CTAGACGGGCCATTGGGACCCAGGCACCACGTCTCAGGGCAGACTAGTGTTGTTCCGTAC 420
|||| ||| ||||||||||||||||||||||||| |||| || ||| |||||||||||||
Sbjct 361 CTAGGCGGTCCATTGGGACCCAGGCACCACGTCTTAGGGAAGGCTACTGTTGTTCCGTAC 420
Query 421 CACAACTATCATTCGGGTCCAGGTTCCGGGTCGGGTAAGAA-GGCCGTCCGGAGTAGAGA 479
|| || ||||||||||||||||||||||||||||||||||| ||| ||||||||||||||
Sbjct 421 CATAATTATCATTCGGGTCCAGGTTCCGGGTCGGGTAAGAATGGC-GTCCGGAGTAGAGA 479
Query 480 GTTGTATGAGTTCGATGTTGAAGATGATGATGACGACGACGATGAGGAGGATATCAGGGG 539
||||||||||| ||||| | ||| | |||||||| || |||||||||||||| ||
Sbjct 480 GTTGTATGAGTACGATG---A---TGA--A-GACGACGATGAAGAGGAGGATATCAGAGG 530
Query 540 AAGTGAAAAGAAAACAAGGAGAGATGGATATGAAGTAGTATATGCTTCCGGAGAGAAGAA 599
|||| |||||||||| ||||||||||| |||||| ||||||||| || |||||||||||
Sbjct 531 CAGTGGAAAGAAAACATGGAGAGATGGACATGAAGGAGTATATGCCTCTGGAGAGAAGAA 590
Query 600 GAGA---------TCAAAGGTAGATCGTCAAGCTGATGATCAA 633
|||| ||||||| ||||||| ||||||||||||||
Sbjct 591 GAGAGAGGGAAGATCAAAGGCAGATCGTGAAGCTGATGATCAA 633
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 32200088227
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5