BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg899955
Length=885
Score E
Sequences producing significant alignments: (Bits) Value
AT3G22080.1 | Symbols: | TRAF-like family protein | chr3:77778... 449 2e-125
AT1G69650.1 | Symbols: | TRAF-like family protein | chr1:26197... 104 1e-21
> AT3G22080.1 | Symbols: | TRAF-like family protein | chr3:7777818-7781718
REVERSE LENGTH=1947
Length=1947
Score = 449 bits (243), Expect = 2e-125
Identities = 440/534 (82%), Gaps = 18/534 (3%)
Strand=Plus/Plus
Query 31 AGAGAACGTTCTCCTTCTTCCTATTCACTTAAGATCCAAAACTTCTCCCAACTCAAGAAA 90
||||||||| ||||| ||| || ||||| ||| |||||||| |||||||| || |||||
Sbjct 1045 AGAGAACGTACTCCTAATTCTTACTCACTCAAGCTCCAAAACATCTCCCAAGTCGAGAAA 1104
Query 91 TCAACACTCTCCTCTGACGGCCAA-TATCAATCTCGTCTTTTCTCTTCTGGTGGATACAA 149
||||| |||| |||||| || ||| |||||||| ||||||||||| ||||||||||||||
Sbjct 1105 TCAACTCTCTTCTCTGATGG-CAAGTATCAATCCCGTCTTTTCTCCTCTGGTGGATACAA 1163
Query 150 CTGGAGAATGATCATATACCC-AAATGGAAACAACAAGGATAACGGAAGTGGCTTTATTT 208
||||||||||||||||||||| ||| |||| | ||| || | |||||||| |||||||
Sbjct 1164 CTGGAGAATGATCATATACCCGAAAGGGAATCG-CAAAGACGATGGAAGTGGGTTTATTT 1222
Query 209 CAATGTATGTGGAAATAGATGG-AGAAAGCCTCATGTCCACACC-ACCAAGCGAGGTGTT 266
|||||||||| ||||||||| | | || |||| || | ||||| |||| ||||||||
Sbjct 1223 CAATGTATGTTGAAATAGATAGCACAA-GCCTTTTGACTACACCTACCACT-GAGGTGTT 1280
Query 267 TGCAGATGTTCGGTTTTTCGTCTTTAATAAAAACGAAAACAAATATTTTACTATTCAAGA 326
||| ||| | ||||||||||| ||||| ||||| ||||| || || | |||||||||| |
Sbjct 1281 TGCCGATCTACGGTTTTTCGTATTTAACAAAAAAGAAAATAAGTACTATACTATTCAACA 1340
Query 327 TGTTGAATCGAAGCCGTTCAATAGT-TTAAGACCGGTGTGGGGATTGCCTCAAGTGCTTC 385
||| || ||||||| |||||| | || ||| | | ||||||||| | ||||||||||
Sbjct 1341 TGTAGAGTCGAAGCTATTCAAT-GCATTCAGAACAATATGGGGATTGGCGCAAGTGCTTC 1399
Query 386 -AGTTTGTTACATTCAATGACCCCAAAAATGGATATATTTTTGGGGGAGATCAATGTGAG 444
|||| | |||||||| ||| || ||||| ||||||||||||| |||||||||||| |||
Sbjct 1400 CAGTT-GATACATTCACTGATCCTAAAAACGGATATATTTTTGAGGGAGATCAATGCGAG 1458
Query 445 TTTGGTGTTGATGTCATTGTTGCTCCACCTCCTACCAAATGGGAAACT-ATCTCTTTTGA 503
|||||||||||||||||||||||| |||||||||| || ||||||| | | | |||| |
Sbjct 1459 TTTGGTGTTGATGTCATTGTTGCTGCACCTCCTACTAATTGGGAAATTCA-CACTTTACA 1517
Query 504 TGCAAA-ACTTATT-AATCCAAAGTTCTCTTGGACTATCAAGAATTTCTCTGAG 555
|| || ||| | | || |||| ||||| |||||| |||||||||||||||||
Sbjct 1518 TG-AAGCACTAAGTCAACCCAA-GTTCTTTTGGACGGTCAAGAATTTCTCTGAG 1569
> AT1G69650.1 | Symbols: | TRAF-like family protein | chr1:26197498-26198821
REVERSE LENGTH=885
Length=885
Score = 104 bits (56), Expect = 1e-21
Identities = 108/131 (82%), Gaps = 12/131 (9%)
Strand=Plus/Plus
Query 437 AATGTGAGTTTGGTGTTGATGTCATTGTTGCTCCACCTCCTACCAAATGGGAAA-CTATC 495
||||||||||||||||||||||||||||||||||||||| |||||| ||||||| | ||
Sbjct 383 AATGTGAGTTTGGTGTTGATGTCATTGTTGCTCCACCTCTTACCAATTGGGAAATCC-TC 441
Query 496 TCTTTT---GATGCA-AAACT-TATTAATCCAAAGTTCTCTTGGACTATCAAGAA-TTTC 549
|||||| |||| | ||||| | ||| ||| ||| || |||||| | | ||||| |||
Sbjct 442 TCTTTTCATGATG-AGAAACTCTCTTA-TCCCAAGGTCACTTGGAGTGTTAAGAACTTT- 498
Query 550 TCTGAGTTGGA 560
||| ||| |||
Sbjct 499 TCTCAGT-GGA 508
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 43201366420
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5