BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg899958
Length=876
Score E
Sequences producing significant alignments: (Bits) Value
AT2G25280.1 | Symbols: | CONTAINS InterPro DOMAIN/s: UPF0103/M... 1419 0.0
> AT2G25280.1 | Symbols: | CONTAINS InterPro DOMAIN/s: UPF0103/Mediator
of ErbB2-driven cell motility (Memo), related (InterPro:IPR002737);
Has 1074 Blast hits to 1072 proteins in 474
species: Archae - 213; Bacteria - 366; Metazoa - 159; Fungi
- 135; Plants - 54; Viruses - 0; Other Eukaryotes - 147 (source:
NCBI BLink). | chr2:10762355-10764810 REVERSE LENGTH=1339
Length=1339
Score = 1419 bits (768), Expect = 0.0
Identities = 841/877 (96%), Gaps = 2/877 (0%)
Strand=Plus/Plus
Query 1 ATGGAGAAAG-TGAGACAACCAACGCATGCAGGCTCTTGGTATACCGATAACCCTACGAA 59
|||||| ||| | ||||||||||| |||||||||||||||||||||||||| ||||| ||
Sbjct 180 ATGGAG-AAGATAAGACAACCAACACATGCAGGCTCTTGGTATACCGATAATCCTACAAA 238
Query 60 GTTGTCATCTGATCTTGAAGAATGGCTTAGTGCAACTGGTTTGACCAAATCTCCTCATGT 119
|||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||
Sbjct 239 ATTGTCATCTGATCTTGAAGAATGGCTTAATGCAACTGGTTTGACCAAATCTCCTGATGT 298
Query 120 TCGAGGCGTCATTGCACCACACGCAGGTTATTCGTATTCCGGTCGTGCCGCTGCTTATGC 179
||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||
Sbjct 299 ACGAGGCGTCATTGCACCACACGCAGGTTATTCGTACTCCGGTCGTGCAGCTGCTTATGC 358
Query 180 TTTTGCAAACATTGATCCTACTAATATTTCGCGGATATTTCTTCTTGGTCCATCTCACCA 239
|||||||||||| ||||||||||| ||||| |||||||||||||||||||||||||||||
Sbjct 359 TTTTGCAAACATAGATCCTACTAACATTTCACGGATATTTCTTCTTGGTCCATCTCACCA 418
Query 240 TTTTTATACTCCAAAATGTGCCCTTTCGACTGCAACAGTTTACAAAACCCCCATTGGAGA 299
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
Sbjct 419 CTTTTATACTCCAAAATGTGCCCTTTCGACTGCAACAGTTTATAAAACCCCCATTGGAAA 478
Query 300 TCTACCCGTTGATGTGGAGATGATTAAGGAGATAAGAGCTATGGGAAAATTTGGAATGAT 359
|||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 479 TCTACCTGTTGATGTGGAGATGATTAAGGAGATACGAGCTATGGGAAAATTTGGAATGAT 538
Query 360 GGATCTACGGGTCGATGAGGCTGAACACAGCATGGAAATGCACTTACCGTATTTGGCCAA 419
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 539 GGATCTACGGGTCGATGAGGCTGAGCACAGCATGGAAATGCACTTACCGTATTTGGCCAA 598
Query 420 AGTATTTAAAGGGCACAATGTGAAAGTTGTACCCATCTTGGTTGGAGCAGTAAGTGCAGA 479
||||||| ||||| ||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 599 AGTATTTGAAGGGAACAATGTGAAAGTTGTACCCATCTTGGTTGGAGCAGTAAGTCCAGA 658
Query 480 AAATGAAGCCATGTACGGTGAATTGCTTGCTAAATATGTGGATGATCCCAAGAACTTTTT 539
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 659 GAATGAAGCCATGTACGGTGAATTGCTTGCTAAATATGTGGACGATCCCAAGAACTTTTT 718
Query 540 CTCAGTGTCCTCTGACTTTTGCCACTGGGGCTCACGGTTCAATTACATGCATTATGACAA 599
|||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||
Sbjct 719 CTCAGTGTCCTCTGACTTTTGCCACTGGGGCTCAAGGTTTAATTACATGCATTATGACAA 778
Query 600 CACTCATGGTGCTATACACAAATCGATTGAGGCTCTAGACAAGAAGGGAATGGATATAAT 659
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 779 CACTCATGGTGCTATACACAAATCGATTGAGGCTCTAGACAAGAAGGGAATGGATATAAT 838
Query 660 AGAGACCGGAGATCCAGATGCCTTTAAGAAGTATCTTCTGGAATTTGAGAACACGATTTG 719
|||||| |||||||| |||||||||||||||||||||||||||||||| |||||||||||
Sbjct 839 AGAGACAGGAGATCCTGATGCCTTTAAGAAGTATCTTCTGGAATTTGAAAACACGATTTG 898
Query 720 TGGGCGCCACCCAATCAGTATTTTTCTCCATATGCTAAAACATTCCTCAAGCAAGATTAA 779
|||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 899 TGGGCGCCACCCGATCAGTATTTTTCTCCATATGCTAAAACATTCATCAAGCAAGATTAA 958
Query 780 GATCAATTTCCTGCGGTACGAGCAGTCAAGCCAATGCCAGACAATGCGGGACAGCAGTGT 839
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 959 GATCAATTTCCTGCGGTACGAGCAGTCAAGCCAATGCCAGACAATGCGAGACAGCAGTGT 1018
Query 840 CAGTTATGCATCTGCTGCAGCCAAGTTGGAAACTTGA 876
||| ||||||||||||||||||||||||||||| |||
Sbjct 1019 CAGCTATGCATCTGCTGCAGCCAAGTTGGAAACATGA 1055
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 42749259097
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5