BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg899960

Length=222
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT2G25290.1 | Symbols: Phox1 | Octicosapeptide/Phox/Bem1p (PB1)...   268    1e-71


> AT2G25290.1 | Symbols: Phox1 | Octicosapeptide/Phox/Bem1p (PB1) 
domain-containing protein / tetratricopeptide repeat (TPR)-containing 
protein | chr2:10765706-10768620 REVERSE LENGTH=2743
Length=2743

 Score =  268 bits (145),  Expect = 1e-71
 Identities = 159/166 (96%), Gaps = 0/166 (0%)
 Strand=Plus/Plus

Query  57    AGGTATGGGATTCAAGATCGATGAGATAGTACAGGCATGGAATGAAATGTATGATGCCAA  116
             ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct  2176  AGGTATGGGATTCAAGATCGATGAGATAGTACAGGCATGGAATGAGATGTATGATGCCAA  2235

Query  117   AAGATGGCAGATCGGTGTCCCATCGTTCCGGCTAGAACCTTTGTTCCGGAGACGGTCACC  176
             |||||||||||| ||||||||||| ||||||||||||||||||||||| |||||||||||
Sbjct  2236  AAGATGGCAGATTGGTGTCCCATCTTTCCGGCTAGAACCTTTGTTCCGAAGACGGTCACC  2295

Query  177   AAAACTTCATGATATTTTAGAAAATGTGTTTTCAGGGCCTCAGTGA  222
              ||||||||||||||||| || ||||||||||||||||||||||||
Sbjct  2296  GAAACTTCATGATATTTTGGAGAATGTGTTTTCAGGGCCTCAGTGA  2341



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 9953014302


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5