BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg899966

Length=252
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT2G25305.1 | Symbols:  | Putative membrane lipoprotein | chr2:...   394    2e-109


> AT2G25305.1 | Symbols:  | Putative membrane lipoprotein | chr2:10774621-10774976 
REVERSE LENGTH=252
Length=252

 Score =  394 bits (213),  Expect = 2e-109
 Identities = 240/253 (95%), Gaps = 2/253 (1%)
 Strand=Plus/Plus

Query  1    ATGGGTTCCTCCAAATTGATGGTTACATGCATTGTTGTTGCTATTCTGGCCATTTCATGT  60
            ||||||||||||||||||||||||||||||||||| |||||||| ||| ||||||| |||
Sbjct  1    ATGGGTTCCTCCAAATTGATGGTTACATGCATTGTCGTTGCTATGCTGACCATTTCGTGT  60

Query  61   GACATTCTCTCTGTTGAAATGGGAATTAGCGTACAAGCTTTACCTCCGACTTGTGGACCA  120
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  61   GACATTCTCTCTGTTGAAATGGGAATTAGCGTACAAGCTTTACCTCCGACTTGTGGACCA  120

Query  121  GATTGTACTGGAACATTCTTGAAACAAGACTGCTATAAATATTGTGCAGGTTTATCTTAT  180
            ||||||||||||| |||| |||| |||||||||| |||||||||||||| ||||||||||
Sbjct  121  GATTGTACTGGAAGATTCATGAATCAAGACTGCTCTAAATATTGTGCAGCTTTATCTTAT  180

Query  181  AAACATGGTGTTTGCATTCTATTCAAAGGACTTCCTCCAAGAACTTCTACAT-ATCGTTG  239
            ||||||||||||||||||||||||  |||||||||||||||||||||||||| | |||||
Sbjct  181  AAACATGGTGTTTGCATTCTATTCCGAGGACTTCCTCCAAGAACTTCTACATTA-CGTTG  239

Query  240  TTGTTGTGGGTAA  252
            |||||||||||||
Sbjct  240  TTGTTGTGGGTAA  252



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 11461046772


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5