BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg899968
Length=636
Score E
Sequences producing significant alignments: (Bits) Value
AT2G25310.1 | Symbols: | Protein of unknown function (DUF2012)... 1027 0.0
AT4G32130.1 | Symbols: | Protein of unknown function (DUF2012)... 568 3e-161
> AT2G25310.1 | Symbols: | Protein of unknown function (DUF2012)
| chr2:10777101-10779226 REVERSE LENGTH=1071
Length=1071
Score = 1027 bits (556), Expect = 0.0
Identities = 606/631 (96%), Gaps = 0/631 (0%)
Strand=Plus/Plus
Query 6 GACGACGACGCCGATCATCAGATCCACTCCTATTCTCGCTTTCATCTTCTTGCAGATCTG 65
||||| |||| ||||||||||||||| ||||| ||||||||||||| |||| ||||| ||
Sbjct 106 GACGATGACGTCGATCATCAGATCCAGTCCTACTCTCGCTTTCATCGTCTTACAGATTTG 165
Query 66 CTTCATCTTCTTTACTTCCACCCTCCCATGCTCTTCTGGGTCTGAGGATAGTTACACCAT 125
||||||||||||| ||||||| |||| ||||||||||||||||||||||||||||||||
Sbjct 166 CTTCATCTTCTTTGCTTCCACTTTCCCTTGCTCTTCTGGGTCTGAGGATAGTTACACCAT 225
Query 126 TACTGGTAGAGTCAAGATTCCACCAAGCAATGTGATTGGTCACATAGCAAAGTTCTCTAA 185
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||
Sbjct 226 TACTGGTAGAGTCAAGATTCCACCAAGCAACGTGATTGGTCACATAGCAAAGTTCTCAAA 285
Query 186 TGTCAAAGTTATACTCAATGGTGGACAGAAGATTACGTTTCTCAGGCCTGATGGATACTT 245
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 286 TGTCAAAGTTATACTCAATGGTGGACAGAAGATTACGTTTCTCAGGCCTGATGGATACTT 345
Query 246 TACTTTTCACGAAGTGCCTGCTGGAACTCATTTGATTGAAGTATCTGCAATGGGCTACTT 305
||||||||| |||||||||||||| |||||||||||||||||||| |||||||| |||||
Sbjct 346 TACTTTTCATGAAGTGCCTGCTGGGACTCATTTGATTGAAGTATCAGCAATGGGTTACTT 405
Query 306 CTTTTCTCCGGTACGAATAGATGTTAGTGCTCGGCATCGTGGCAAGGTTCAAGCAACACT 365
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 406 CTTTTCTCCGGTACGAGTAGATGTTAGTGCTCGGCATCGTGGCAAGGTTCAAGCAACACT 465
Query 366 AACAGAAACCAGGAGGAGTCTTACTGAGCTGGTTTTGGAGCCATTGAGGGAAGAGCAATA 425
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 466 AACAGAAACCAGGAGGAGTCTTACTGAGCTGGTTTTGGAGCCATTGAAGGAAGAGCAATA 525
Query 426 CTATGAGATCCGAGAGCCTTTCAACATTTTGTCGATCGTGAAAAGTCCGATGGGTCTCAT 485
|||||||| |||||||||||||||||| ||||||||||||||||||| |||||||||||
Sbjct 526 TTATGAGATTCGAGAGCCTTTCAACATTATGTCGATCGTGAAAAGTCCAATGGGTCTCAT 585
Query 486 GGTGGGATTCATGGTTGTTGTTGTGTTCCTAATGCCCAAATTAATGGAAAACATAGATCC 545
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 586 GGTGGGATTCATGGTCGTTGTTGTGTTCCTAATGCCCAAATTAATGGAAAACATAGATCC 645
Query 546 AGAGGAGATGAAGCAAGCACAAGAGGAAATGAGGAGACAAGGCGTGCCTTCGCTCACGAG 605
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 646 AGAGGAGATGAAGCAAGCACAAGAGGAAATGAGGAGACAAGGCGTGCCTTCGCTCACAAG 705
Query 606 CTTGTTACCAGGCGCTGGGGCTAGCCGCTAA 636
|||||||||||||||||||||||||||||||
Sbjct 706 CTTGTTACCAGGCGCTGGGGCTAGCCGCTAA 736
> AT4G32130.1 | Symbols: | Protein of unknown function (DUF2012)
| chr4:15520031-15522593 REVERSE LENGTH=1039
Length=1039
Score = 568 bits (307), Expect = 3e-161
Identities = 478/560 (85%), Gaps = 14/560 (3%)
Strand=Plus/Plus
Query 62 TCTGCTTCATCTTCTTTACTTCCAC-CCTCCCATGCTCTTCTGGGTCTGAGGATAGTTAC 120
||| |||| |||||||| ||||||| | ||| || ||| |||||||||||||||||||||
Sbjct 160 TCTTCTTCTTCTTCTTTGCTTCCACTCTTCCGAT-CTCATCTGGGTCTGAGGATAGTTAC 218
Query 121 ACCATTACTGGTAGAGTCAAGATTCCACCAAGCAATGTGATTGGTCACATAGC-AAAGTT 179
|| || || |||||||| | | ||||| |||||| ||||||||||| ||| ||| ||
Sbjct 219 ACGATCACGGGTAGAGTGAGGGTTCCAGCAAGCACCGTGATTGGTCATGCAGCTAAA-TT 277
Query 180 CTCTAATGTCAAAGTTATACTCAATGGTGGACAG-AAGATTACGTTT-CTCAGGCCTGAT 237
||| ||| |||||||||||||||| ||||||||| | | |||| ||| |||||||| |||
Sbjct 278 CTCAAATATCAAAGTTATACTCAACGGTGGACAGCATG-TTAC-TTTCCTCAGGCCGGAT 335
Query 238 GGATACTTTACTTTTCACGAAGTGCCTGCTGGAACTCATTTGATTGAAGTATCTGCAATG 297
||||||||||| || ||| ||||||| || || |||||| |||||||||| | |||| ||
Sbjct 336 GGATACTTTACCTTCCACAAAGTGCCAGCGGGGACTCATCTGATTGAAGTTTATGCACTG 395
Query 298 GGCTACTTCTTTTCTCCGGTACGAATAGATGTTAGTGCTCGGCATCGTGGCAAGGTTCAA 357
||||||||||| || || || ||| | |||||||||||||||||||||||||||||||||
Sbjct 396 GGCTACTTCTTCTCCCCAGTGCGAGTTGATGTTAGTGCTCGGCATCGTGGCAAGGTTCAA 455
Query 358 GCAACACTAACAGAAACCAGGAGGAGTCTTACTGAGCTGGTTTTGGAGCCATTGAGGGAA 417
|||||||| ||||||||||| ||||||||||||||||||||||||||||||||| ||| |
Sbjct 456 GCAACACTTACAGAAACCAGAAGGAGTCTTACTGAGCTGGTTTTGGAGCCATTGCGGGCA 515
Query 418 GAGCAATACTATGAGATCCGAGAGCCTTTCAACATTT--TGTCGATCGTGAAAAGTCCGA 475
||||||||||| ||||| ||||| |||||| | | | |||| || ||||||||||| |
Sbjct 516 GAGCAATACTACGAGATGCGAGAACCTTTCT-C-TGTAATGTCAATTGTGAAAAGTCCAA 573
Query 476 TGGGTCTCATGGTGGGATTCATGGTTGTTGTTGTGTTCCTAATGCCCAAATTAATGGAAA 535
||||||| ||||||||||||||||| ||||| |||||| ||||||| || || |||||||
Sbjct 574 TGGGTCTTATGGTGGGATTCATGGTCGTTGTCGTGTTCTTAATGCCTAAGTTGATGGAAA 633
Query 536 ACATAGATCCAGAGGAGATGAAGCAA-GCACAAGAGGAAATGAGGAGACAAGGCGTGCCT 594
|||||||||| ||||| |||||| | ||||||||| | ||||| || ||||| ||||||
Sbjct 634 ACATAGATCCCGAGGAAATGAAG-AGCGCACAAGAGCAGATGAGAAGCCAAGGAGTGCCT 692
Query 595 TCGCTCACGAGCTTGTTACC 614
|| ||||| |||||||||||
Sbjct 693 TCACTCACTAGCTTGTTACC 712
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 30693063817
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5