BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg899984
Length=1284
Score E
Sequences producing significant alignments: (Bits) Value
AT2G25460.1 | Symbols: | CONTAINS InterPro DOMAIN/s: C2 calciu... 1814 0.0
> AT2G25460.1 | Symbols: | CONTAINS InterPro DOMAIN/s: C2 calcium-dependent
membrane targeting (InterPro:IPR000008); BEST
Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G04860.1);
Has 108 Blast hits to 69 proteins in 11 species:
Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants
- 108; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
| chr2:10832754-10835483 REVERSE LENGTH=1802
Length=1802
Score = 1814 bits (982), Expect = 0.0
Identities = 1171/1262 (93%), Gaps = 13/1262 (1%)
Strand=Plus/Plus
Query 1 ATGGCAAAGAAGGTAAGGAAGCTTCACGTGACGGTGAAGCCGGTGAGGCTTGATGGATTA 60
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 110 ATGGCAAAGAAGGTGAGGAAGCTTCACGTGACGGTGAAGCCGGTGAGGCTTGATGGTTTA 169
Query 61 CCGGCTATTCTCGGTGATGAAACCGCAGGGAAGAACCTTTCCGCTATGGTAGAGGTGAAA 120
||||||||||||||||||||||| ||||| |||||||||||||| ||||| |||||||||
Sbjct 170 CCGGCTATTCTCGGTGATGAAACGGCAGGAAAGAACCTTTCCGCGATGGTGGAGGTGAAA 229
Query 121 TGGAAAGGACCGGTCTCCGGTTTTGGATTAGGCTTCGTCCCTTTCTATCGGTCGAATCGA 180
||||| ||||| ||||||||||||||||| ||||||||||| |||||||| || ||||||
Sbjct 230 TGGAAGGGACCTGTCTCCGGTTTTGGATTGGGCTTCGTCCCATTCTATCGTTCTAATCGA 289
Query 181 CCGGTTAACCATACGAGCTCTAAACCGATTGCTTTAGGCGT-AAGCCATGTAGAATGGGA 239
||||||||||||||||||||||||||||||||||||||| | || ||| |||||||||||
Sbjct 290 CCGGTTAACCATACGAGCTCTAAACCGATTGCTTTAGGC-TCAAACCACGTAGAATGGGA 348
Query 240 AGAAGAATTCGAACGCATTTGTTGCATCGTTGGCCCGTGGAACCTCTCGTTCAATGTCTT 299
||||| ||||||||| |||||||||| |||||||| ||||||||||| |||||||||||
Sbjct 349 GGAAGAGTTCGAACGCGTTTGTTGCATTGTTGGCCCATGGAACCTCTCCTTCAATGTCTT 408
Query 300 CTACGGTGAGAATATGGACGCaaaaaacaaaaaGTCTTTGATCGGAAAAGCATCGTTGGA 359
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 409 CTACGGTGAGAATATGGACGCAAAAAACAAAAAGTCTTTGATCGGAAAAGCATCGTTGGA 468
Query 360 TTTGTCGGAGTTAGCGTCGAAACAAGAATCGACGGTGGAGAGAAAGCTTCCGATTCGGTC 419
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 469 TTTATCGGAGTTAGCGTCGAAACAAGAATCGACGGTGGAGAGAAAGCTTCCGATTCGGTC 528
Query 420 AAAAGGTTCCGTACTTTCGAAGGAAGCAACTCTTTTGGTCAACGTGACTTTTTCCGAGGT 479
||| |||||||||||||||||||||||||| ||| ||||||||||||||||||| |||||
Sbjct 529 AAAGGGTTCCGTACTTTCGAAGGAAGCAACACTTGTGGTCAACGTGACTTTTTCTGAGGT 588
Query 480 AAGAACCGAACCAGACGACTTTATGCAACTTGGTCAGGTCTCCATTGACTCAGCAATTCC 539
||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||
Sbjct 589 AAGAACCGAACCAGACGACTTTATGCAACTTGGTCAGATCTCCGTTGACTCAGCAATTCC 648
Query 540 AAAGAAGATGTCAACGAGTCGCCGCGGCGGTG-TAAGGGATTTTGATTCGTCTTCATCTC 598
||||| | |||||||||||| |||||||||| || | |||| || || | ||| || |
Sbjct 649 GAAGAAAAAGTCAACGAGTCGTCGCGGCGGTGGTA-GCCATTTCGACTCTTTTTCCTCCC 707
Query 599 CGGCAACTGCGTCAAGTTCAGGTGGACGGAGCCCCCTTGTTGAAACCGGGTCATCTTCAA 658
| || || ||||| |||||||| ||||| |||||| | ||||||||||||| || |||||
Sbjct 708 CAGCCACCGCGTCGAGTTCAGGCGGACGTAGCCCCGTAGTTGAAACCGGGTTATTTTCAA 767
Query 659 GCCCGGATGAGAACCAATCTGAACCGGGTCAAAAAGCCGGGTTTAATTGGTGGAAGAGAA 718
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 768 GCCCGGATGAGAACCAGTCTGAACCGGGTCAAAAAGCCGGGTTTAATTGGTGGAAGAGAA 827
Query 719 GACGGTTAAGCTTTTCCATGACATGGAGAAGAGAACCGAGAGAGGATGAAGTTACAAAGA 778
|||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||
Sbjct 828 GACGGTTAAGCTTTTCTATGACATGGAGAAGAGAACCGAGAGAGGATGAAGTTACGAAGA 887
Query 779 CATCAACAAAACCATCGGAGGAACCAGAAAAACCGGCGACGGCGGCGACGGAGCTAACGA 838
|||||||||||||||||||||||| ||||||||||||||||| | | | || | |
Sbjct 888 CATCAACAAAACCATCGGAGGAACTAGAAAAACCGGCGACGG-----A-G-A--TACCAA 938
Query 839 TCGAGGCAAACAAATGGGTAATGAAGGATTTAGTGAGCCGCAATGGAAAATCGAAACTGA 898
||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||
Sbjct 939 TCGAGGCAAACAAATGGGTAATGAAGGATTTAGTGAGCCGCGATGGAAAATCGAAGCTGA 998
Query 899 AATCGGAAGTTTACTCAGCGTCGATTGATCAAAGAAGCGAACAAGCCGCCGGAGAAGCAG 958
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 999 AATCGGAAGTTTACTTAGCGTCGATTGATCAAAGAAGCGAACAAGCCGCCGGAGAAGCAG 1058
Query 959 CTTGCGCGGCGGTTGCAGTGGTGGTGGCGCATTGGTTCCATGCGAATCCTAAGCTCATAA 1018
| |||||||||||||| ||||||||||| ||||||||||| ||||||||||||||||| |
Sbjct 1059 CATGCGCGGCGGTTGCGGTGGTGGTGGCTCATTGGTTCCACGCGAATCCTAAGCTCATCA 1118
Query 1019 ATCCTTCAGGAACAGAGTTCGATTCGTTAATAACGCAAGGCTCTTCTTTATGGCAATCTC 1078
||||||||||||||| ||||||||| |||| |||||||| |||||||||||||||||||
Sbjct 1119 ATCCTTCAGGAACAGCGTTCGATTCACTAATCACGCAAGGGTCTTCTTTATGGCAATCTC 1178
Query 1079 TCTGCGACAAAGAATCGTATCTGAGATTGTTCCCAAACAAGCATTTCGATCTGGAAACGA 1138
| |||||||||||||||||||| |||||||| ||||||| ||||||||||||||||||||
Sbjct 1179 TTTGCGACAAAGAATCGTATCTAAGATTGTTTCCAAACAGGCATTTCGATCTGGAAACGA 1238
Query 1139 TCGTTTCCGCGAATTTACGACCGGTTAGGGTTTGTACTGAGAAATCGATTACCGGGTTTT 1198
|||||||||| |||||||||||||||||||||||||| || |||||| |||||||||| |
Sbjct 1239 TCGTTTCCGCAAATTTACGACCGGTTAGGGTTTGTACCGATAAATCGTTTACCGGGTTAT 1298
Query 1199 TCAGCCCGGAGAGATTTGCTTCGTTGGATGGTCTAATGTCGTTTGATCAGATTTGGGACG 1258
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1299 TCAGCCCGGAGAGATTTGCTTCGTTGGATGGTCTGATGTCGTTTGATCAGATTTGGGACG 1358
Query 1259 AG 1260
||
Sbjct 1359 AG 1360
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 63152285610
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5