BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg899988

Length=180
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT1G60490.1 | Symbols: ATVPS34, VPS34, PI3K | vacuolar protein ...   291    2e-78


> AT1G60490.1 | Symbols: ATVPS34, VPS34, PI3K | vacuolar protein 
sorting 34 | chr1:22285572-22290315 REVERSE LENGTH=2790
Length=2790

 Score =  291 bits (157),  Expect = 2e-78
 Identities = 171/178 (96%), Gaps = 0/178 (0%)
 Strand=Plus/Plus

Query  1    ATGGGTGCGAACGAGTTTCGTTTCTTCCTCTCCTGCGATATCAATTCGCCCGTCACTTTT  60
            |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct  126  ATGGGTGCGAACGAGTTTCGTTTCTTCCTCTCCTGCGATATCAATTCGCCGGTCACTTTT  185

Query  61   CGTGTCGAGAAGCTTGATGGAAACCTCCCCGTCAAGAAATCTTCTGATTCGGGAGTTGTC  120
            ||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct  186  CGTATCGAGAAGCTTGATGGAAACCTCCCCGTCAAGAAATCGTCTGATTCGGGAGTTGTC  245

Query  121  TCCGTCGTAGAGGAGAAAAAACCAGAGCTTTACATTGAATGTGCATTGTATATTGATG  178
            ||| ||| |||||||||||||||||||||||||||||| ||||||||||| |||||||
Sbjct  246  TCCATCGCAGAGGAGAAAAAACCAGAGCTTTACATTGAGTGTGCATTGTACATTGATG  303



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 7897312107


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5