BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg900002
Length=309
Score E
Sequences producing significant alignments: (Bits) Value
AT3G14400.1 | Symbols: UBP25 | ubiquitin-specific protease 25 |... 311 3e-84
> AT3G14400.1 | Symbols: UBP25 | ubiquitin-specific protease 25
| chr3:4811532-4815515 REVERSE LENGTH=2712
Length=2712
Score = 311 bits (168), Expect = 3e-84
Identities = 219/243 (90%), Gaps = 5/243 (2%)
Strand=Plus/Plus
Query 68 AGAGCCAGGTCAAGTGTTTGTCATGTGGTGCCGAGTCAAATACAGCCGATGAGATTATGG 127
|||||||||||||||||||||| |||||||| ||||| |||| |||||||||||||||||
Sbjct 787 AGAGCCAGGTCAAGTGTTTGTCTTGTGGTGCGGAGTCTAATAAAGCCGATGAGATTATGG 846
Query 128 ATATCAGTCTTGAAATTTTGCATAGTATCTCTATCAAGGAGTCTA-TGCaaaaaaaaTTT 186
||||||||||||| |||||||| |||| |||| | |||||||| | ||||||| |||
Sbjct 847 ATATCAGTCTTGAGATTTTGCAGAGTAGCTCTGTGAAGGAGTC-ATTGCAAAAGTTCTTT 905
Query 187 CAATCAGAGATTTTAGATGGCAACAATAAGTATAAATGCGAGACCTGTGATAAACTGGTG 246
|||||||||||||||||||||||||||||||||| ||||||| ||||||| |||||||||
Sbjct 906 CAATCAGAGATTTTAGATGGCAACAATAAGTATAGATGCGAGTCCTGTGAAAAACTGGTG 965
Query 247 ACGGCGAGGAAGCAGATGTCGTCTATACTCCAAATGCCTAATATCCTTGTTATCCAATTG 306
|||||||||||||||||||| | ||||| ||| |||||||||||||||||||||||||
Sbjct 966 ACGGCGAGGAAGCAGATGTC-T--ATACTGCAAGCGCCTAATATCCTTGTTATCCAATTG 1022
Query 307 AAA 309
|||
Sbjct 1023 AAA 1025
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 14326308465
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5