BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg900004

Length=600
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT2G25605.1 | Symbols:  | unknown protein; FUNCTIONS IN: molecu...   928    0.0  


> AT2G25605.1 | Symbols:  | unknown protein; FUNCTIONS IN: molecular_function 
unknown; INVOLVED IN: biological_process unknown; 
LOCATED IN: chloroplast; Has 75 Blast hits to 75 proteins 
in 20 species: Archae - 2; Bacteria - 4; Metazoa - 0; Fungi 
- 0; Plants - 36; Viruses - 0; Other Eukaryotes - 33 (source: 
NCBI BLink). | chr2:10899443-10901041 FORWARD LENGTH=867
Length=867

 Score =  928 bits (502),  Expect = 0.0
 Identities = 571/604 (95%), Gaps = 5/604 (1%)
 Strand=Plus/Plus

Query  1    ATGTCGTTTTGGTCACTCGTGCTTCCATCTCCACCTTCCTCCTTATCTGCTAAA-CTCAA  59
            ||||||||| |||| ||||||||||||||||||||||||||||| ||||| |||  ||||
Sbjct  99   ATGTCGTTTGGGTCTCTCGTGCTTCCATCTCCACCTTCCTCCTTGTCTGC-AAATGTCAA  157

Query  60   ACCTTTCAATGACTCCGGAAGGCTTCATCGTAATCTCGTACGAGCTTC-T--TCCGATGT  116
             | |||||||| || ||| |||||| ||||||||||||| |||||||| |  ||||||||
Sbjct  158  GCATTTCAATGGCTACGGTAGGCTTAATCGTAATCTCGTGCGAGCTTCTTCGTCCGATGT  217

Query  117  TCCCGATTTCCTCTCTGCCGATTGGTTGGAGAGTCGTAGGAAACGACCTTTTGGCCCCAG  176
            ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct  218  TCCCGATTTCCTCTCTGCCGATTGGTTGGAGAGCCGTAGGAAACGACCTTTTGGCCCCAG  277

Query  177  ACTTGATTTTAGTGCGGAAGAGGCCGTTCGACATCAGCTTGATGCATTGAAGTATAATGA  236
            ||||||||||||||| ||||| || |||||||||||||||||||||||||||||||||||
Sbjct  278  ACTTGATTTTAGTGCAGAAGACGCTGTTCGACATCAGCTTGATGCATTGAAGTATAATGA  337

Query  237  CCATCCTCGTGATGATTATGGCATCGAGGTCATGTATCGGTTTGCTGGATTCGATCCATT  296
            |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct  338  CCATCCTCGTGATGATTATGGCATTGAGGTCATGTATCGGTTTGCTGGATTCGATCCATT  397

Query  297  TGAGAGATCCACCTATTTCGGTCCTTTCTTTGATCTAGGACAGTTTGAAAGGTTTAGGCG  356
            |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct  398  TGAGAGATCCACCTATTTCGGTCCTTTCTTTGATCTTGGACAGTTTGAAAGGTTTAGGCG  457

Query  357  TATTTTTCATCACTCGTCTTACCGTGTGTTGCTTGGTCACAAGGACAGAAAAATCTTAAG  416
            ||||||||||||||||||||||||||||||||||||||||||||| |||||| | |||||
Sbjct  458  TATTTTTCATCACTCGTCTTACCGTGTGTTGCTTGGTCACAAGGATAGAAAACTTTTAAG  517

Query  417  TAGTTTGTTCGTGGAGGAGAATCGTTTCAAGCAGAGGATTTGGATTCAGGGAAATCGACC  476
             |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct  518  CAGTTTGTTCGTGGAGGAGAATCGTTTCAAGCAGAGGATCTGGATTCAGGGAAATCGACC  577

Query  477  TGAGGAAGAAGAGATATTTGAATTCACAATGTTCCAGCGGATAGGTGGTTCATGGGATGG  536
            ||| || |||||||||||||||||||||||||||||||| ||||| ||||||||||||||
Sbjct  578  TGAAGAGGAAGAGATATTTGAATTCACAATGTTCCAGCGAATAGGCGGTTCATGGGATGG  637

Query  537  TTATTGGTTGACGGAAAGCTTGCTTCATGACGGAGATGTGTTTTCAGGAGGGATGGCTTA  596
             ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  638  ATATTGGTTGACAGAAAGCTTGCTTCATGACGGAGATGTGTTTTCAGGAGGGATGGCTTA  697

Query  597  CTGA  600
            ||||
Sbjct  698  CTGA  701



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 28884634525


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5