BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg900011
Length=888
Score E
Sequences producing significant alignments: (Bits) Value
AT2G25650.1 | Symbols: | DNA-binding storekeeper protein-relat... 562 2e-159
AT4G00270.1 | Symbols: | DNA-binding storekeeper protein-relat... 387 1e-106
AT5G14280.1 | Symbols: | DNA-binding storekeeper protein-relat... 274 1e-72
> AT2G25650.1 | Symbols: | DNA-binding storekeeper protein-related
transcriptional regulator | chr2:10914586-10916216 FORWARD
LENGTH=1550
Length=1550
Score = 562 bits (304), Expect = 2e-159
Identities = 421/474 (89%), Gaps = 21/474 (4%)
Strand=Plus/Plus
Query 421 GCTC-AGAACGAGATTGGGGAGGAGATGTTGAAGGAGCATGAGGAAACCTTGAATGAGAA 479
|||| ||| ||||| | |||||||||||||||||||||||||||| |||| ||||||||
Sbjct 869 GCTCGAGAGCGAGAGCGAGGAGGAGATGTTGAAGGAGCATGAGGAACCCTTTAATGAGAA 928
Query 480 TGGTGCAGCGAAAATAACAGACAACAACGGGACTACTCAAATAGTACCGCAGAGCGAGAG 539
|||||||| ||| |||| |||||| ||||||||||||||||||| || ||||||||||||
Sbjct 929 TGGTGCAGAGAATATAAGAGACAATAACGGGACTACTCAAATAGCACAGCAGAGCGAGAG 988
Query 540 C--GAG-GAGGAGATGTTGAAGGAGCACGAGGAAGTGCTGGCTAATACTGAACCCT-TAT 595
| ||| |||||||||||||||||||| |||||| | |||||||||||||| | | ||
Sbjct 989 CGAGAGTGAGGAGATGTTGAAGGAGCATGAGGAA--G-TGGCTAATACTGAA-CTTGTAA 1044
Query 596 ATGAGAATGGGAG-AGCGAAAACAAAAAAGAACGGGACTACTGCTGG-AAAG-GAGA-GT 651
||||||||||| | ||||||||||| | ||||||||||||||| ||| |||| |||| |
Sbjct 1045 ATGAGAATGGG-GCAGCGAAAACAACAGAGAACGGGACTACTGGTGGAAAAGAGAGACAT 1103
Query 652 CCTGACGATGATGATGCATTA-CT-T--GCTGTGCAGGATGCATTTGAGGCTGTAATGTC 707
|||||||||||||| || | | | ||||||||||||||||||||||||||||||||
Sbjct 1104 GATGACGATGATGATG-ATGAGTTATGCGCTGTGCAGGATGCATTTGAGGCTGTAATGTC 1162
Query 708 ACAAGGTTTAAGTGATTATCAAAAGAAGTTGCAGCTTGAGAAGCTCATGAACCTTGGAAC 767
||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1163 GCAAGGTTTAAGTGGTTATCAAAAGAAGTTGCAGCTTGAGAAGCTGATGAACCTTGGAAC 1222
Query 768 TGGAAAAAGAAGAGAGTTGAGCGATGAATGGAAAGCGTTATGTGTTGAGGAACGGAA-AT 826
||||||||||||||||||||| |||||||||||||||||||||||||||||| | || ||
Sbjct 1223 TGGAAAAAGAAGAGAGTTGAGTGATGAATGGAAAGCGTTATGTGTTGAGGAAAG-AAGAT 1281
Query 827 TGAATATCAAGAAGCTTAGATTTTCTGCCAAGCTTGCAGAGGCTGCAAATTATA 880
||||||||||||||||||||||||| ||||||||||||||||| || ||| |||
Sbjct 1282 TGAATATCAAGAAGCTTAGATTTTCCGCCAAGCTTGCAGAGGCAGCTAATGATA 1335
Score = 475 bits (257), Expect = 3e-133
Identities = 427/501 (85%), Gaps = 44/501 (9%)
Strand=Plus/Plus
Query 104 TTGATTACAGAGCTAAGACAGGATTCCAAT-CCAAAATTGATTGGGATGCGTTTTATC-G 161
||||||||||||||||||||||||| |||| ||||||||||||||||||||||||| | |
Sbjct 424 TTGATTACAGAGCTAAGACAGGATT-CAATCCCAAAATTGATTGGGATGCGTTTTA-CAG 481
Query 162 TTTCCTCGGAAGTTCAATCGTTGCGAAATTCTCCAAGGATCAGGTTTTGAGTAAGATCAG 221
||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 482 TTTCCTCGGAAGTTCTATCGTTGCGAAATTCTCCAAGGAGCAGGTTTTGAGTAAGATCAG 541
Query 222 GAAATTGAAAAGGAGATTTCTTGTTCACTGGGAGAAAATCAATGAAGGGAATGATCCCAA 281
||| |||||||||||||||| |||||| ||||||||||||| ||||||||||||||| ||
Sbjct 542 GAAGTTGAAAAGGAGATTTCATGTTCATTGGGAGAAAATCAGTGAAGGGAATGATCCGAA 601
Query 282 GTTTACTAGGTCTAGTGATTCTGAAGCCTTTGGATTTTCTTCAATGATTTGGGGACAAAA 341
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 602 ATTTACTAGGTCTAGTGATTCTGAAGCCTTTGGATTTTCTTCGATGATTTGGGGACAA-- 659
Query 342 TGAAGCTGAATTTGGTAATCATGATGGTATGGATAA--AGA-G---------CACGAGG- 388
| | ||||||||||||| |||||||||||||||| ||| | ||||| |
Sbjct 660 -G--G-TGAATTTGGTAATGATGATGGTATGGATAAGGAGATGGTGAAGGAGCACGATGT 715
Query 389 AACCCGTAAATGGGGCAGCGGAAAACGGGACTGCTC-A---G-A-A------CGAGATTG 436
|| | | |||||| ||||| ||||| |||||||||| | | | | ||||| ||
Sbjct 716 AAACGG-AAATGGCGCAGCTGAAAATGGGACTGCTCGAATAGCACAGGAGAACGAGAGTG 774
Query 437 GGGAGGAGATGTTGAAGGAGCATGAGGAAACCTTGAATGAGAATGGTGCAGCGAAAATAA 496
||||||||||||| ||||||||||||||||| || |||||||||||||||| | | ||||
Sbjct 775 GGGAGGAGATGTTAAAGGAGCATGAGGAAACGTTAAATGAGAATGGTGCAGAGGAGATAA 834
Query 497 CAGACAACAACGGGACTACTC--AAAT-A--GTA-C-CGCAGAGCGAGAGCGAGGAGGAG 549
||||||| ||| |||| ||| ||| | | | | || ||||||||||||||||||||
Sbjct 835 GAGACAACGACGAGACTGCTCGGAAAGCACAGCAGCTCG-AGAGCGAGAGCGAGGAGGAG 893
Query 550 ATGTTGAAGGAGCACGAGGAA 570
|||||||||||||| ||||||
Sbjct 894 ATGTTGAAGGAGCATGAGGAA 914
> AT4G00270.1 | Symbols: | DNA-binding storekeeper protein-related
transcriptional regulator | chr4:117152-118577 REVERSE
LENGTH=1343
Length=1343
Score = 387 bits (209), Expect = 1e-106
Identities = 316/363 (87%), Gaps = 25/363 (7%)
Strand=Plus/Plus
Query 104 TTGATTACAGAGCTAAGACAGGATTCCAAT-CCAAAATTGATTGGGATGCGTTTTATCGT 162
||||||||||||||||||||||||| |||| |||||||||||||||||||||||| | ||
Sbjct 351 TTGATTACAGAGCTAAGACAGGATT-CAATCCCAAAATTGATTGGGATGCGTTTTGTAGT 409
Query 163 TTCCTCGGAAGTTCAATCGTTGCGAAATTCTCCAAGGATCAGGTTTTGAGTAAGATCAGG 222
|||||||||||||| ||||||| || ||||||||||||||||||||||||||| ||||||
Sbjct 410 TTCCTCGGAAGTTCTATCGTTGAGAGATTCTCCAAGGATCAGGTTTTGAGTAAAATCAGG 469
Query 223 AAATTGAAAAGGAGATTTCTTGTTCACTGGGAGAAAATCAATGAAGGGAATGATCCCAAG 282
|| ||||||||||| |||| |||||||| ||||||||||||| ||||||||||||||||
Sbjct 470 AAGTTGAAAAGGAGGTTTCATGTTCACTCGGAGAAAATCAATCAAGGGAATGATCCCAAA 529
Query 283 TTTACTAGGTCTAGTGATTCTGAAGCCTTTGGATTTTCTTCAATGATTTGGGGACAAAAT 342
|||||||||||||||||||||||||||||||| |||||||| |||||||||||||||
Sbjct 530 TTTACTAGGTCTAGTGATTCTGAAGCCTTTGGGTTTTCTTCGATGATTTGGGGACAA--- 586
Query 343 GAAGCTGAATTTGGTAATCATGATGGTATGGATAAAGAGCACGAGG-AACCCGTAAATGG 401
| | ||| | | | | |||||||||||||| |||||||||| || | | ||||||
Sbjct 587 G--G-TGA-T--G--A-T---GATGGTATGGATAAGGAGCACGAGGTAAACGG-AAATGG 633
Query 402 GGCAGCGGAAAACGGGACTGCTCAGAACGAGATTGGGGAGGAGATGTTGAAGGAGCATGA 461
|||||||||||| ||||| | | ||||| ||||||||||||||||||||||| ||
Sbjct 634 TGCAGCGGAAAACCGGACT----A-A-CGAGAGCGGGGAGGAGATGTTGAAGGAGCACGA 687
Query 462 GGA 464
|||
Sbjct 688 GGA 690
Score = 353 bits (191), Expect = 1e-96
Identities = 312/366 (85%), Gaps = 26/366 (7%)
Strand=Plus/Plus
Query 534 CGAGAGCGAGGAGGAGATGTTGAAGGAGCACGAGGAAG-TGCTGGCTAATACTGAACCCT 592
|||||||| ||||||||||||||||||||||||||| | | ||||||||||||||| |
Sbjct 655 CGAGAGCGGGGAGGAGATGTTGAAGGAGCACGAGGAGGAAG-TGGCTAATACTGAACTTT 713
Query 593 TATATGAGAATGGGAG-AGCGAAAACAAAAAAGAACGGGACTACT-GCTGG-AAAG-GAG 648
|| ||||||||||| | ||| ||||||| | |||| ||||||| | | ||| |||| |||
Sbjct 714 TAAATGAGAATGGG-GCAGCCAAAACAACAGAGAATGGGACTAGTAG-TGGAAAAGAGAG 771
Query 649 --A-G-T-----C-CTGACGATGATGATGCA-TTACT-TGCTGTGCAGGATGCATTTGAG 696
| | | | ||| |||||||||| | ||| | || ||||||||||||||||||
Sbjct 772 ACATGATGAGGACAATGATGATGATGATG-AGTTA-TGCGCGGTGCAGGATGCATTTGAG 829
Query 697 GCTGTAATGTCACAAGGTTTAAGTGATTATCAAAAGAAGTTGCAGCTTGAGAAGCTCATG 756
|| || ||||| ||||||||||||| |||||||||||||||||||||||||||||| |||
Sbjct 830 GCGGTGATGTCGCAAGGTTTAAGTGGTTATCAAAAGAAGTTGCAGCTTGAGAAGCTGATG 889
Query 757 AACCTTGGAACTGGAAAAAGAAGAGAGTTGAGCGATGAATGGAAAGCGTTATGTGTTGAG 816
|||||||||| ||| ||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 890 AACCTTGGAAATGGTAAAAGAAGAGAGTTGAGTGATGAATGGAAAGCGTTATGTGTTGAG 949
Query 817 GAA-CGGAA-ATTGAATATCAAGAAGCTTAGATTTTCTGCCAAGCTTGCAGAGGCTGCAA 874
||| | || ||| ||||||||||||||||||||||| ||||||||||||||||| || |
Sbjct 950 GAAAC--AAGATTCAATATCAAGAAGCTTAGATTTTCCGCCAAGCTTGCAGAGGCAGCTA 1007
Query 875 ATTATA 880
|| |||
Sbjct 1008 ATGATA 1013
> AT5G14280.1 | Symbols: | DNA-binding storekeeper protein-related
| chr5:4609123-4611444 FORWARD LENGTH=1719
Length=1719
Score = 274 bits (148), Expect = 1e-72
Identities = 226/262 (86%), Gaps = 11/262 (4%)
Strand=Plus/Plus
Query 622 AAGAACGGGACTACTGCTGGAAAGGAGAGTCCTGACGATGATGATGCA--T-TACT-TGC 677
||||||||| ||||||||||| |||||| ||| |||||||||| | | | | |||
Sbjct 637 AAGAACGGG---ACTGCTGGAAAAGAGAGTGATGATGATGATGATG-ATGTGTTGTGTGC 692
Query 678 TGTGCAGGATGCATTTGAG---GCTGTAATGTCACAAGGTTTAAGTGATTATCAAAAGAA 734
||||| |||||| |||||| | | ||||| ||||| ||||||||||||||||||||
Sbjct 693 TGTGCGGGATGCGTTTGAGACCACCATGATGTCGCAAGGATTAAGTGATTATCAAAAGAA 752
Query 735 GTTGCAGCTTGAGAAGCTCATGAACCTTGGAACTGGAAAAAGAAGAGAGTTGAGCGATGA 794
|||||||||||||||||| ||||||||||||||||| |||||||||||||||||| ||||
Sbjct 753 GTTGCAGCTTGAGAAGCTGATGAACCTTGGAACTGGTAAAAGAAGAGAGTTGAGCAATGA 812
Query 795 ATGGAAAGCGTTATGTGTTGAGGAACGGAAATTGAATATCAAGAAGCTTAGATTTTCTGC 854
||||||||| ||||||||||||||| |||||||||||||| |||||| ||||||| ||
Sbjct 813 ATGGAAAGCACTATGTGTTGAGGAACTAAAATTGAATATCAACAAGCTTCGATTTTCCGC 872
Query 855 CAAGCTTGCAGAGGCTGCAAAT 876
||||||||||||||| ||||||
Sbjct 873 CAAGCTTGCAGAGGCAGCAAAT 894
Score = 167 bits (90), Expect = 2e-40
Identities = 199/249 (80%), Gaps = 18/249 (7%)
Strand=Plus/Plus
Query 113 GAGCTAAGACAGGATTCCAATCCAAAATTGATTGGGATGCGTTTTATCGTTTCCTCGGAA 172
||||||| |||||| || ||||||||||||||||||||||||||||| ||| | || ||
Sbjct 242 GAGCTAAAACAGGACTCGAATCCAAAATTGATTGGGATGCGTTTTATTGTTACGTCA-AA 300
Query 173 G-TTCAAT-CGTTGCGAAA-TTCTCCAAG-GATCAGGTTTTGAGTAAGATCAGGAAATTG 228
| ||| || | | | |||| || |||||| | ||| || ||||||||| |||||| |||
Sbjct 301 GGTTCCATTCAT-GTGAAAGTT-TCCAAGTGC-CAGCTTATGAGTAAGACCAGGAAGTTG 357
Query 229 AA-AAGGAGATTTCTTGTTCAC-TGGGAGAAAATCAATGAAGGGAATGATCC-CAAGTTT 285
|| ||| || || |||| ||| ||| |||||||| || |||| |||||||| || |||
Sbjct 358 AAGAAGAAG-TTCCTTGATCAAATGG-AGAAAATCGATCAAGGAAATGATCCACAT-TTT 414
Query 286 ACTAGGTCTAGTGATTCTGAAGCCTTTGGATTTTCT-TCAATGATTTGGGGACAAAAT-G 343
|||||||||||||| ||||||| ||||||| ||| | | |||||||| | ||||| |
Sbjct 415 ACTAGGTCTAGTGAAACTGAAGCTTTTGGATATTCCATGA-TGATTTGGCGT-AAAATTG 472
Query 344 AAGCTGAAT 352
| |||||||
Sbjct 473 ATGCTGAAT 481
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 43352068861
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5