BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg900013
Length=486
Score E
Sequences producing significant alignments: (Bits) Value
AT2G33980.1 | Symbols: atnudt22, NUDT22 | nudix hydrolase homol... 497 3e-140
> AT2G33980.1 | Symbols: atnudt22, NUDT22 | nudix hydrolase homolog
22 | chr2:14349764-14359840 REVERSE LENGTH=1990
Length=1990
Score = 497 bits (269), Expect = 3e-140
Identities = 301/317 (95%), Gaps = 0/317 (0%)
Strand=Plus/Plus
Query 170 CAGGAGAAATTTCTTTACCAGGTGGTAAAGCAGAAGAGAATGATAAGGATGATGGGATTA 229
|||||||| ||||||| ||||||||||||||||||||| |||||||||||||||||||||
Sbjct 314 CAGGAGAAGTTTCTTTGCCAGGTGGTAAAGCAGAAGAGCATGATAAGGATGATGGGATTA 373
Query 230 CTGCAACTAGAGAGGCAGAGGAAGAGATTGGTTTAGACCCTTCGCTTGTTGATGTTGCTG 289
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||
Sbjct 374 CTGCAACTAGAGAGGCAGAGGAAGAGATTGGATTAGACCCTTCGCTTGTTGATGTTGTTG 433
Query 290 CTTTCCTCGAGCCATTTCTGTCTCAGCATCTGCTTAGAGTAATTCCTGTAATAGGAATAT 349
|||||||||| |||||||| ||||||||||||||||||||||||||||| |||||||||
Sbjct 434 CTTTCCTCGAACCATTTCTATCTCAGCATCTGCTTAGAGTAATTCCTGTGGTAGGAATAT 493
Query 350 TGTGGGACAGAAAAGCATTCAATCCAACGCCAAGTCCTGCAGAGGTGGAAGCCGTGTTTG 409
| |||||||||||||||||||||||||| |||| ||||||||| |||||||||||| |||
Sbjct 494 TATGGGACAGAAAAGCATTCAATCCAACACCAAATCCTGCAGAAGTGGAAGCCGTGCTTG 553
Query 410 ATGCACCCTTTGAAATGTTTCTGAAGGATGAGAACCGGAGATCCGAGGAGATTGATTGGA 469
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 554 ATGCACCCTTTGAAATGTTTCTGAAGGATGAGAACCGGAGATCCGAGGAGTTTGATTGGA 613
Query 470 TGGGGGAAAAGCATTTG 486
|||| ||||||||||||
Sbjct 614 TGGGAGAAAAGCATTTG 630
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 23157941767
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5