BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg900057
Length=1236
Score E
Sequences producing significant alignments: (Bits) Value
AT2G25840.2 | Symbols: OVA4 | Nucleotidylyl transferase superfa... 1844 0.0
> AT2G25840.2 | Symbols: OVA4 | Nucleotidylyl transferase superfamily
protein | chr2:11021848-11025370 FORWARD LENGTH=1527
Length=1527
Score = 1844 bits (998), Expect = 0.0
Identities = 1161/1240 (94%), Gaps = 10/1240 (1%)
Strand=Plus/Plus
Query 1 ATGGGGCACGCCACGActctctctcacttcctcatcctctcttcctccaggctctctcgt 60
||||| |||||||||| |||||||||||||||||||||||||||||||||| ||||||||
Sbjct 77 ATGGGACACGCCACGAGTCTCTCTCACTTCCTCATCCTCTCTTCCTCCAGGTTCTCTCGT 136
Query 61 ctcGGGTCCCGCACTAGATTCCTCGCAAAACCCA-CTCCTCTCTCCGGCTCTTTTTC-TC 118
|||||||| | ||||||||| ||| | ||||||| || ||||||||||||||||||| ||
Sbjct 137 CTCGGGTCTCTCACTAGATTACTCTCCAAACCCACCT-CTCTCTCCGGCTCTTTTTCTTC 195
Query 119 CCTTTCCGGTCACCGGACAAGGGTTCCGATGCTGTTGCTCCGCCGCCACAGAAGACCCTT 178
| ||| |||||||||||||||||||||||||||||||||||| ||||||||| ||| |||
Sbjct 196 CATTT-CGGTCACCGGACAAGGGTTCCGATGCTGTTGCTCCGTCGCCACAGATGACACTT 254
Query 179 CTCCTTCTGTAAAGAGACGCGTGGTCTCTGGTGTCCAGCCTACAGGTTCAATTCACTTAG 238
||||||||||||||| ||| |||||||||||||||||||||||||||||| |||||||||
Sbjct 255 CTCCTTCTGTAAAGAAACGTGTGGTCTCTGGTGTCCAGCCTACAGGTTCAGTTCACTTAG 314
Query 239 GAAACTATCTCGGTGCTATCAAAAATTGGGTTGCTCTTCAGGATACATATGAAACACTCT 298
| ||||||||||| ||||||||||| ||||| ||||||||||||||||||||||||||||
Sbjct 315 GCAACTATCTCGGGGCTATCAAAAACTGGGTCGCTCTTCAGGATACATATGAAACACTCT 374
Query 299 TTATCATCGTAGACTGTCACGCGATAACACTACCATATGATACACATCAACTAGGAAAGG 358
|||||||||||||| ||||||||||||||| ||||||||||||| ||||||||||||||
Sbjct 375 TTATCATCGTAGACCATCACGCGATAACACTTCCATATGATACACGTCAACTAGGAAAGG 434
Query 359 CAACTACGGATACCGCAGCACTTTATCTAGCATGTGGTATAGACGTTTCTAAGGCTTCGG 418
|||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
Sbjct 435 CAACAACGGATACCGCAGCACTTTATCTAGCATGTGGTATAGACGTCTCTAAGGCTTCAG 494
Query 419 TATTTGTGCAATCTCACGTCCCCGCTCATG-CGCAGTTAATGTGGCTTTTATCTGCATCC 477
||||||||||||||||||| |||||||||| || |||||||||||||||||| | |||||
Sbjct 495 TATTTGTGCAATCTCACGTTCCCGCTCATGTCG-AGTTAATGTGGCTTTTATGTTCATCC 553
Query 478 ACGCCTATTGGTTGGTTAAAGAAAATGACTCAATTTAAAGAGAAATCACGCAAGGAGGGG 537
|| |||||||| |||||| ||||||||| ||| || ||||||||||||||||||||||||
Sbjct 554 ACACCTATTGGGTGGTTACAGAAAATGATTCAGTTCAAAGAGAAATCACGCAAGGAGGGG 613
Query 538 GCTGAGGATGCTAGTGTCGCTTTGTTTACTTATCCTGATCTGATGACTGCTGATATCCTC 597
| |||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 614 GTTGAGAATGCTAGTGTCGGTTTGTTTACTTATCCTGATCTGATGACTGCTGATATCCTC 673
Query 598 TTGTATCAGTCTGATTTTGTCCCTGTTGGCGAGGACCAGAAGCAGCACATAGAACTTGCC 657
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 674 TTGTATCAGTCTGATTTTGTCCCTGTTGGTGAGGACCAGAAGCAGCACATAGAACTTGCC 733
Query 658 CGTGAAATCGCTCAGCGTGTGAATCATTTATATGGTGG-AAGAAAGTGGAAGAAGCTTGG 716
|||||||| || |||||||||||||||||||||||||| ||| |||||||||||||||||
Sbjct 734 CGTGAAATTGCACAGCGTGTGAATCATTTATATGGTGGAAAG-AAGTGGAAGAAGCTTGG 792
Query 717 AGGGTATAG-AACTTTGCGCGGTGGTTCGCTCTTTAAGATACCAGAACCACTCATACCAC 775
||||||| | || ||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 793 AGGGTAT-GAAATTTTCCGCGGTGGTTCGCTCTTTAAGATACCAGAACCACTCATACCAC 851
Query 776 AAGCTGGAGCCCGTGTTATGTCTCTTACCGATGGTCTTTCCAAGATGTCCAAGTCCGCAC 835
|||||||||| ||||||||||||||||| |||||||||||||||||||||||||| || |
Sbjct 852 AAGCTGGAGCTCGTGTTATGTCTCTTACTGATGGTCTTTCCAAGATGTCCAAGTCTGCCC 911
Query 836 CTTCTGATCAATCCCGGATCAATCTCCTTGACTCAAAAGATCTGATTGTCGACAAGATAA 895
|||||||||| |||||||| ||||||||||||||||||||| ||||||| ||||||||||
Sbjct 912 CTTCTGATCAGTCCCGGATTAATCTCCTTGACTCAAAAGATTTGATTGTGGACAAGATAA 971
Query 896 AACGGTGCAAGACAGACTCATTTGCAGGCCTTGAATTTGACAATGCTGAGAGACCTGAAT 955
||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||
Sbjct 972 AACGGTGCAAGACAGACTCATTTGCTGGGCTTGAATTTGACAATGCTGAGAGACCTGAAT 1031
Query 956 GCAACAATCTCCTTTCAGTATATCAGATTGTTTCGGGCAAGACAAAAGAGGAAGTGACGG 1015
||||||||||||| ||| |||||||||||||||| ||||||| |||||||||||||| ||
Sbjct 1032 GCAACAATCTCCTCTCAATATATCAGATTGTTTCAGGCAAGAAAAAAGAGGAAGTGATGG 1091
Query 1016 AGGAATGCAAAGATATGAGCTGGGGTACATTTAAGCCTCTCCTTGCAGATGCTTTGATCG 1075
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1092 AGGAATGCAAAGATATGAGCTGGGGTACATTTAAGCCTCTCCTTGCAGATGCTTTGATCG 1151
Query 1076 AACATCTGAGTCCTATCCAGGCCCGTTATCAGGAGATAATAGCGGAACCAGCGTATTTGG 1135
||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1152 AACATCTGAGTCCAATCCAGGCCCGTTATCAGGAGATAATAGCGGAACCAGAGTATTTGG 1211
Query 1136 ACAAAGTATTGTCAGAAGGTGCGGATAGAGCGGCGGAATTAGGAGATGTCACAATGCGCA 1195
||||| ||||||||||||||||||||||||| | ||| || |||| ||||||||||||||
Sbjct 1212 ACAAAATATTGTCAGAAGGTGCGGATAGAGCCGAGGAGTTGGGAGCTGTCACAATGCGCA 1271
Query 1196 ATATGTACCAAGCTATGGGATTCTATCAAAGGAGGAGATA 1235
||||||| ||||||||||||| |||||| |||||||||||
Sbjct 1272 ATATGTATCAAGCTATGGGATACTATCAGAGGAGGAGATA 1311
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 60742659450
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5