BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg900061
Length=729
Score E
Sequences producing significant alignments: (Bits) Value
AT3G24360.1 | Symbols: | ATP-dependent caseinolytic (Clp) prot... 420 1e-116
AT4G13360.1 | Symbols: | ATP-dependent caseinolytic (Clp) prot... 268 4e-71
> AT3G24360.1 | Symbols: | ATP-dependent caseinolytic (Clp) protease/crotonase
family protein | chr3:8839728-8842831 REVERSE
LENGTH=1393
Length=1393
Score = 420 bits (227), Expect = 1e-116
Identities = 273/293 (93%), Gaps = 12/293 (4%)
Strand=Plus/Plus
Query 146 AGGTATTTACAGCTGAGTATAGCCTGATATGCAAGATTGCTGGATACaaaaaaaCCATAT 205
||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||
Sbjct 415 AGGTATTTACAGCTGAGTATAGCCTGATATGCAAGATTGCTGGATAC-AGAAAACCATAT 473
Query 206 GTCTCTTTAATGGATGGCATAACAATGGGA-------TTGGTCTTTCTGGACATAGG-CG 257
||||||||||||||||||||||||||||| ||||||||||||||||| || ||
Sbjct 474 ATCTCTTTAATGGATGGCATAACAATGGGATTTGGTCTTGGTCTTTCTGGACAT-GGACG 532
Query 258 CTACCGAGTGATAACAGAGAGGATGGTCCTCGCAATGCCAGAAAATGGAATCGGGTTGTT 317
||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||
Sbjct 533 CTACCGAGTGATAACAGAGAGGACGGTCCTCGCAATGCCAGAAAATGGAATCGGCTTGTT 592
Query 318 TCCAGATGTTGGGTTTTCATATATAGCAGCTCATAGCCCTGGCAG-AGGATATGTTGGTG 376
|||||||||||| ||||||||||| |||||||||||||||||| | ||||| ||||||||
Sbjct 593 TCCAGATGTTGGATTTTCATATATTGCAGCTCATAGCCCTGGC-GAAGGATCTGTTGGTG 651
Query 377 CTTACCTTGGTATGACTGGGAGAAGGATTTCCACACCTTCAGATGCACTGTTT 429
||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 652 CTTACCTAGGTATGACTGGGAGAAGGATTTCCACACCTTCAGATGCACTGTTT 704
Score = 350 bits (189), Expect = 1e-95
Identities = 265/302 (88%), Gaps = 3/302 (1%)
Strand=Plus/Plus
Query 430 ATAAAATCAGCTTTTACTGCAAGTAAGTCTGTTCAA-GAAACAATCGAAGAGCTGAAGAA 488
||| |||||||||||| || ||||||||||||| || |||||||| ||||||||||| ||
Sbjct 873 ATAGAATCAGCTTTTAGTGTAAGTAAGTCTGTT-AAGGAAACAATAGAAGAGCTGAAAAA 931
Query 489 GTACCAGCTGAGCACTGAAGATTCAGTTGCAGAATGGGCTAATGAAGCACTCAAAGGCCT 548
|| ||||| ||||| ||| | |||||||||||||||||||||||||||| || ||||| |
Sbjct 932 GTTCCAGCAGAGCAGTGAGGCTTCAGTTGCAGAATGGGCTAATGAAGCAGTCCAAGGCAT 991
Query 549 TGTAAAAGGAGCACCATTTTCTCTGCATCTAACGCATAACTACTTCTCCAAAGTTGTTTG 608
|| |||||| ||||| |||||||| | ||||| || || |||||||||||||||| |||
Sbjct 992 TGAAAAAGGGGCACCTTTTTCTCTTTACCTAACACACAAGTACTTCTCCAAAGTTGCTTG 1051
Query 609 TGCCAAGGGTAAAACCGACAACGGGATGGCAATGCTTAATGGTGTGATGAAAACTGAGTA 668
|||||||||||||||| |||||| ||||||| ||||| |||||||||| |||||||||
Sbjct 1052 TGCCAAGGGTAAAACCAACAACGCCATGGCAACACTTAACGGTGTGATGATAACTGAGTA 1111
Query 669 CCGTATTGCTCTAAGATATGCTTTGCGCGGTGATTTCACTGAAGGTGTTAGAGCAG-CTT 727
||| ||||||||||||| ||| |||||| ||||||||||||||||||||||||||| |||
Sbjct 1112 CCGCATTGCTCTAAGATCTGCATTGCGCAGTGATTTCACTGAAGGTGTTAGAGCAGTCTT 1171
Query 728 GA 729
||
Sbjct 1172 GA 1173
> AT4G13360.1 | Symbols: | ATP-dependent caseinolytic (Clp) protease/crotonase
family protein | chr4:7775128-7777895 FORWARD
LENGTH=1465
Length=1465
Score = 268 bits (145), Expect = 4e-71
Identities = 249/296 (84%), Gaps = 20/296 (7%)
Strand=Plus/Plus
Query 146 AGGTATTTACAGCTGAGTATAGC-CTGATA--TGCAAGATTGCTG-GATACaaaaaaaCC 201
||||||||||||| ||||||| | |||||| ||| | ||||||| | ||| ||||| ||
Sbjct 397 AGGTATTTACAGCAGAGTATA-CACTGATATGTGC-A-ATTGCTGCG-TAC-AAAAAGCC 451
Query 202 ATATGTCTCTTTAATGGATGGCATAACAATGGGA-------TTGGTCTTTCTGGACATAG 254
|||| | || || |||||||| |||||||||||| ||||||||||||||||| |
Sbjct 452 ATATATTTCATTGATGGATGGTATAACAATGGGATTTGGTCTTGGTCTTTCTGGACAT-G 510
Query 255 G-CGCTACCGAGTGATAACAGAGAGGATGGTCCTCGCAATGCCAGAAAATGGAATCGGGT 313
| |||||||| |||||||||||||||| ||| || || ||||||||||||||||| || |
Sbjct 511 GTCGCTACCGTGTGATAACAGAGAGGACGGTTCTTGCCATGCCAGAAAATGGAATTGGCT 570
Query 314 TGTTTCCAGATGTTGGGTTTTCATATATAGCAGCTCATAGCCCTGGCAG-AGGATATGTT 372
|||| || ||||| |||||||||||||||||||||||||||||||| || ||||| ||||
Sbjct 571 TGTTCCCTGATGTCGGGTTTTCATATATAGCAGCTCATAGCCCTGG-AGGAGGATCTGTT 629
Query 373 GGTGCTTACCTTGGTATGACTGGGAGAAGGATTTCCACACCTTCAGATGCACTGTT 428
|||||||| |||||| ||||||| | |||||| ||| | || ||||| ||||||||
Sbjct 630 GGTGCTTATCTTGGTTTGACTGGTAAAAGGATCTCCGCGCCATCAGACGCACTGTT 685
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 35364839488
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5