BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg900081
Length=831
Score E
Sequences producing significant alignments: (Bits) Value
AT2G25920.1 | Symbols: | BEST Arabidopsis thaliana protein mat... 1330 0.0
> AT2G25920.1 | Symbols: | BEST Arabidopsis thaliana protein match
is: 3'-5' exonuclease domain-containing protein / K homology
domain-containing protein / KH domain-containing protein
(TAIR:AT2G25910.2); Has 131 Blast hits to 125 proteins in
54 species: Archae - 0; Bacteria - 50; Metazoa - 12; Fungi
- 12; Plants - 41; Viruses - 0; Other Eukaryotes - 16 (source:
NCBI BLink). | chr2:11054291-11056042 REVERSE LENGTH=1103
Length=1103
Score = 1330 bits (720), Expect = 0.0
Identities = 793/828 (96%), Gaps = 5/828 (1%)
Strand=Plus/Plus
Query 1 ATGGCGTCGTCTTCTCCAACTCAGCGTACTCACGTCTCAATTCCTCCCGAACCAGGAGGA 60
||| ||||||| |||||||| |||||||||||||||||||||||||| ||||||||||||
Sbjct 127 ATGACGTCGTCCTCTCCAACACAGCGTACTCACGTCTCAATTCCTCCTGAACCAGGAGGA 186
Query 61 AAGTCACTGACACAAGAAGCTAATGATCCACCAGTTCCGATATCAGTTTCGTCGCCGTGC 120
|||||||| ||||||||||||||||| ||||||||||||||||||||||| |||||||||
Sbjct 187 AAGTCACTAACACAAGAAGCTAATGAGCCACCAGTTCCGATATCAGTTTCCTCGCCGTGC 246
Query 121 GGGAAACGAACCAGAGATCCGGAAGATGAGGTCTATCTTGATAACCTTCGCTCTCAGAAA 180
|||||||||||||||||||| ||||| ||||||||||| |||||||||||||||||||||
Sbjct 247 GGGAAACGAACCAGAGATCCCGAAGACGAGGTCTATCTCGATAACCTTCGCTCTCAGAAA 306
Query 181 CGTTATCTTAGCGAGATAATGGCGTGTAGTTTAAACGGATTAACAGTCGGAGACTCACTT 240
||||||||||||||||||||||| ||||||||||||||| ||||||| ||||||||||||
Sbjct 307 CGTTATCTTAGCGAGATAATGGCTTGTAGTTTAAACGGACTAACAGTAGGAGACTCACTT 366
Query 241 CCCGTCAACATGTTAGAGTCTCCAGCTCGGTCTGAGAGCTTTCTTTATCACAGGGATGAT 300
|| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 367 CCTGTCAACATGTTAGAGTCTCCAGCACGGTCTGAGAGCTTTCTTTATCACAGGGATGAT 426
Query 301 TTATCATTACAATACTCTCCCATGTCAGAAGACTCGGACGAAGCGAGATTCTGTGAGGAC 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 427 TTATCATTACAATACTCTCCCATGTCAGAAGACTCGGACGAAGCGAGATTCTGTGAGGAC 486
Query 361 CCAACAGCAACAGCAAGCACTAGCTCATCGCAACCCGAGAGCCGCCCAACTAGTCCAGTT 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 487 CCAACAGCAACAGCAAGCACTAGCTCATCGCAACCCGAGAGCCGCCCAACTAGTCCAGTT 546
Query 421 TCACCATACCGATACCAAAGACCTCTTACTTCAACAAATTCACCACAACCGTCATCAACA 480
|||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||
Sbjct 547 TCACCATACCGATACCAAAGACCTCTTACTTCAACAAACTCACCACAACCGTCACCAACA 606
Query 481 ATCTTACACCGTTCACATACATGTCCTACCTCCATGATCTCCAATGCAACAACTACTACT 540
|||||||||| |||||||||||||||| |||||||||||||||||||| |||||||||||
Sbjct 607 ATCTTACACCATTCACATACATGTCCTGCCTCCATGATCTCCAATGCAGCAACTACTACT 666
Query 541 ACTACTCCACAGTCTCGCCAAAGAGGATCAGACACAGAAGGAAGGTTTCCATCATCGCCC 600
|| || | ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 667 AC-AC-C-ACAGTCTCGCCAAAGAGGATCAGACACAGAAGGAAGGTTTCCATCATCGCCC 723
Query 601 AGCGATATCTGCCATTCGGGGGACTTGAGGAGAACCGCTCTACTCAGGTCTGTTCAAATG 660
|| ||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||
Sbjct 724 AGTGATATCTGCCATTCGGGTGACTTGAGGAGAACCGCTCTACTCAGGTCGGTTCAAATG 783
Query 661 AGAACACAACCATGTGGTTATAATTCAAGTTCAGGG-CCAAGCAATATTGACGGTGAAGA 719
|||||||||||||||||||||| ||||||||| ||| |||||||||||||||||||||||
Sbjct 784 AGAACACAACCATGTGGTTATAGTTCAAGTTC-GGGACCAAGCAATATTGACGGTGAAGA 842
Query 720 GAGGATGTGTTCTAAGTCCATGGAAGAAGATAGAGGCTATAATAGAGGGGATGATATCTC 779
|||||||||||||||||| ||||||||||||||||||||||| | |||||| |||||| |
Sbjct 843 GAGGATGTGTTCTAAGTCTATGGAAGAAGATAGAGGCTATAACAAAGGGGAAGATATCCC 902
Query 780 TTACACTGAAGTCTCTAGTAAGAGCAAGTCTTGTAAAGCATTGGACAT 827
|||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 903 TTACGCTGAAGTCTCTAGTAAGAGCAAGTCTTGTAAAGCATTGGACAT 950
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 40488722482
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5