BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg900102
Length=660
Score E
Sequences producing significant alignments: (Bits) Value
AT2G26050.1 | Symbols: | Protein of unknown function (DUF1644)... 876 0.0
AT1G80220.1 | Symbols: | Protein of unknown function (DUF1644)... 385 3e-106
> AT2G26050.1 | Symbols: | Protein of unknown function (DUF1644)
| chr2:11098652-11099380 REVERSE LENGTH=666
Length=666
Score = 876 bits (474), Expect = 0.0
Identities = 595/652 (91%), Gaps = 13/652 (2%)
Strand=Plus/Plus
Query 1 ATGTGTGAGTCAAGCAACAATGTCAGAGTGTCGCCATACCCGCTTCGGTCTTCTAGGACC 60
|||||||||||||||||||| |||||||| ||||||||||||||||||||||| ||||||
Sbjct 1 ATGTGTGAGTCAAGCAACAAAGTCAGAGTATCGCCATACCCGCTTCGGTCTTCGAGGACC 60
Query 61 GACAAACACAAGTCGTCTGAGTCGCCGCCTATTGAGACAGGTTGGGAGGATGTGCGTGGA 120
|||||||||||| |||| |||| |||||||||||||||||||||||||||||||||||
Sbjct 61 GACAAACACAAGGCGTCAGAGT---CGCCTATTGAGACAGGTTGGGAGGATGTGCGTGGA 117
Query 121 TGTCATCCTTACATGTGCGATACGAGTGTTCGTCACTCCAACTGTTTTAAGCAGTTCCGT 180
||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||
Sbjct 118 TGTCATCCTTACATGTGCGATACGAGTGTTCGTCACTCCAATTGTTTCAAGCAGTTCCGC 177
Query 181 AAAAAGAACCG-AACAAAGCGCTTA-AGCACCAAGACCTTACAATGTCCTCTCTGTAGAG 238
| ||| |||| || ||||||| || | | ||||||||||||| ||||||||||||||||
Sbjct 178 AGAAA-AACCATAAAAAAGCGCCTATACC-CCAAGACCTTACATTGTCCTCTCTGTAGAG 235
Query 239 GAGAAGTATTCGAGGCGACAAACGTGACAAGCACTGCAAGAAGATTTATGAATGCTCAAC 298
| ||||||| |||| ||||||| ||||| ||||||||||||||||||||||||||| |||
Sbjct 236 GTGAAGTATCCGAGACGACAAAGGTGACGAGCACTGCAAGAAGATTTATGAATGCTAAAC 295
Query 299 CGAGGTCTTGCTCTGTAGAGGATTGCAAATTCTCTGGGACGTATTCTCAGCTTAATAAGC 358
||||||||||||| |||||||||||||||||||||||||||| ||||||||||| |||||
Sbjct 296 CGAGGTCTTGCTCCGTAGAGGATTGCAAATTCTCTGGGACGTTTTCTCAGCTTACTAAGC 355
Query 359 ACTTGAAAACTGAGCATCGCGGTATTGTCCCACAAAAGGTCGATCCACAGAGACAACAGA 418
|||||||||||||||||||||||||||| |||| |||||||||||||| |||||||||||
Sbjct 356 ACTTGAAAACTGAGCATCGCGGTATTGTGCCACCAAAGGTCGATCCACTGAGACAACAGA 415
Query 419 GGTGGGAAATGATGGAGAGAGATGCTGAATACGTTGAACTCATGACTGCAGCTGAGATTC 478
| |||||||||||||||||| || |||||||||||||||||||||||||||||| ||||
Sbjct 416 GATGGGAAATGATGGAGAGACATTCTGAATACGTTGAACTCATGACTGCAGCTGGGATTT 475
Query 479 CGC--ATGCGACCGAGGTTG-TGCATCAACAGCTTCCCAACGATCATCATCATCCTCATG 535
||| ||| | | ||||| | |||| |||||||||||| | ||||| ||||||||||||
Sbjct 476 CGCGTATG-G-CTGAGGT-GATGCAACAACAGCTTCCCCAGGATCAGAATCATCCTCATG 532
Query 536 TGTTTCGGGTGACCGTTAATGGAGCCATATGGAATCTAATTGATCCGAGTCAGGGAAGGA 595
|||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 533 TGTTTCAAGTGACCGTTAATGGAACCATATGGAATCTAATTGATCCGAGTCAGGGAAGGA 592
Query 596 ATGGATTAGGCATCACCAACTATACCCCAATGCAGTTTCTACCATTGAGCAT 647
|||||||||||||||||||||||| | ||||||||||| ||||||| |||||
Sbjct 593 ATGGATTAGGCATCACCAACTATAGCGCAATGCAGTTTGTACCATTAAGCAT 644
> AT1G80220.1 | Symbols: | Protein of unknown function (DUF1644)
| chr1:30167839-30168606 FORWARD LENGTH=768
Length=768
Score = 385 bits (208), Expect = 3e-106
Identities = 376/455 (83%), Gaps = 19/455 (4%)
Strand=Plus/Plus
Query 117 TGGATGTCATCCTTACATGTGCGATACGAGTGTTCGTCACTCCAACTGTTTTAAGCAGTT 176
|||||||| |||||||||||||| |||||| ||||||||||||||||||| || |||||
Sbjct 201 TGGATGTCGTCCTTACATGTGCGGCACGAGTTTTCGTCACTCCAACTGTTTCAAACAGTT 260
Query 177 CCGTAAAAAGAACCGAACAAAGCGCTTAAGCACCAAGACCTTACAATGTCCTCTCTGTAG 236
| | ||| ||| ||| |||||||| || ||||||||||||||| || ||||| |||||
Sbjct 261 TTGCAGAAACAACAGAAAAAAGCGCTCAAACACCAAGACCTTACATTGCCCTCTTTGTAG 320
Query 237 AGGAGAAGTATTCGAGGCGACAAACG-TGAC-AAGCACTGCAAGAAGATTTATGAATGCT 294
||||||||| || ||| ||| ||| | | | ||| |||||||||||||| |||||||||
Sbjct 321 AGGAGAAGTCTTGGAGACGAAAAAGGCT-TCGAAG-ACTGCAAGAAGATTCATGAATGCT 378
Query 295 CAACCGAGGTCTTGCTCTGTAGA-GGATTGCAAATTCTCTGGGACGTATTCTCAGCTTAA 353
|||||||||||||| |||| || || || |||| || ||||| ||| |||| |||||
Sbjct 379 AAACCGAGGTCTTGCCCTGTGGATGG-CTGTGAATTTTCAGGGACATATGCTCACCTTAA 437
Query 354 TAAGCACTTGAAAACTGAGCATC-GCGGTATTGTCCCA-CAAAAGGTCGATCCACAGAGA 411
||||||||||||||||||||||| | ||| |||||||| |||| |||||||||||| ||
Sbjct 438 TAAGCACTTGAAAACTGAGCATCAG-GGTCTTGTCCCAGCAAA-GGTCGATCCACAAAGG 495
Query 412 CAACAG-AGGTGGGAAATGATGG-AGAGAGATGCTGAATACGTTGAA-CTCATGACTGCA 468
||| || |||||||||||| ||| | ||| |||||||||| ||| || |||||| |||||
Sbjct 496 CAA-AGTAGGTGGGAAATGTTGGTA-AGACATGCTGAATATGTT-AATCTCATGTCTGCA 552
Query 469 GCTGAGATTCCGCATGCGACCGAGGTTGTGCATCAACAGCTTCCCAACGATCATCATCAT 528
|||| |||||||||| | | | |||||||||||| || ||||||||| ||||||||| |
Sbjct 553 GCTGGGATTCCGCATATGTCTGGGGTTGTGCATCATCAACTTCCCAACAATCATCATCTT 612
Query 529 CCTCATGTGTTTCGGGTGACCGTTAATGGAGCCAT 563
|| |||| || | |||| | ||| |||| ||||
Sbjct 613 CCG-ATGT-TT-CAGGTGGGCTTTAGTGGAACCAT 644
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 31898683345
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5