BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg900103

Length=294
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT5G36290.1 | Symbols:  | Uncharacterized protein family (UPF00...   346    7e-95


> AT5G36290.1 | Symbols:  | Uncharacterized protein family (UPF0016) 
| chr5:14302739-14305176 FORWARD LENGTH=1224
Length=1224

 Score =  346 bits (187),  Expect = 7e-95
 Identities = 259/294 (88%), Gaps = 3/294 (1%)
 Strand=Plus/Plus

Query  1     CGTCGCTTATTCTCAAGATTTTGTACCCCAATATTTCTAGAGTCCTTCAACTTAACCTTT  60
             ||||| |||||||||||||||||||||||||||||||| |||||||||| ||||||||||
Sbjct  730   CGTCGTTTATTCTCAAGATTTTGTACCCCAATATTTCTGGAGTCCTTCATCTTAACCTTT  789

Query  61    CTAGCTGAATGGGGTGACCGTAGCAAGATCGCTACAATAGATTTATCTTTTTTGAAGTGT  120
             |||||||||||||||||||||||| ||||||||||||||| |||  |   |   |||   
Sbjct  790   CTAGCTGAATGGGGTGACCGTAGCCAGATCGCTACAATAGCTTTGGCGACTCACAAG-AA  848

Query  121   CGATATAGGATTGTCCATCGGGGCAACTATTGGACAAACGCGTTGTGTACTTCACCAGCG  180
             ||  |||||| || |||| ||||||| ||||||||| ||  | |||||||||||| ||| 
Sbjct  849   CGCCATAGGAGTGGCCATTGGGGCAAGTATTGGACACAC-TG-TGTGTACTTCACTAGCA  906

Query  181   GTTGTTGGAGGAAGCATGCTGGCTTTAAGGATCTCACAACGGACGGTTGCAACTGTTGGA  240
             ||||||||||||||||||||||||| ||||||||| ||||| ||||| ||||||||||||
Sbjct  907   GTTGTTGGAGGAAGCATGCTGGCTTCAAGGATCTCGCAACGTACGGTCGCAACTGTTGGA  966

Query  241   GGCTTGCTCTTCTTCGGCTTTTCAGTCTCCTCCTATTTCTATCCTCCATTATAG  294
             ||||| |||||| ||||||||||||||||||||||||||||||||||||| |||
Sbjct  967   GGCTTACTCTTCCTCGGCTTTTCAGTCTCCTCCTATTTCTATCCTCCATTGTAG  1020



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 13572292230


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5